Contig 004289:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020K01Sequence714007868 (3)ref|XP_002265990.1|9e-74PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera778004289 (3)ref|XP_002265990.1|5e-96PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera
JMSF029O05Sequence693007868 (3)ref|XP_002265990.1|1e-69PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera719004289 (3)ref|XP_009613429.1|5e-76PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Nicotiana tome
JMSF032F16Sequence665007868 (3)ref|XP_002265990.1|1e-73PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera794004289 (3)ref|XP_002265990.1|3e-96PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Vitis vinifera

Alignment

This contig is upended


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rJMSF020K01+                                                                    GA
rJMSF032F16+                                                      CAGTTGATAACAGTGA
                      ____________________________________________________________
consensus                                                         CAGTTGATAACAGTGA
 
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rJMSF020K01+          TGATGCAGTGCATCCTGCTCTGATGCCAGGACTATGCGCAAAAGGTGCCGTTTCGTATGA
rJMSF032F16+          TGATGCAGTGCATCCTGCTCTGATGCCAGGACTATGCGCAAAAGGTGCCGTTTCGTATGA
                      ____________________________________________________________
consensus             TGATGCAGTGCATCCTGCTCTGATGCCAGGACTATGCGCAAAAGGTGCCGTTTCGTATGA
 
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rJMSF020K01+          GAAGCATAAAGACCTCTGGAGAGAGGTGGAGAGAGAAAAGGATGTCATGATACGGACAGA
rJMSF032F16+          GAAGCATAAAGACCTCTGGAGAGAGGTGGAGAGAGAAAAGGATGTCATGATACGGACAGA
                      ____________________________________________________________
consensus             GAAGCATAAAGACCTCTGGAGAGAGGTGGAGAGAGAAAAGGATGTCATGATACGGACAGA
 
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rJMSF020K01+          GAAAGGACTGTATTTCAGACCTGCTTATGATGTTCGTCTAAGGGAGCCTCATGCAAAAAT
rJMSF032F16+          GAAAGGACTGTATTTCAGACCTGCTTATGATGTTCGTCTAAGGGAGCCTCATGCAAAAAT
rJMSF029O05+              GGACTGTATTTCAGACCTGCTTATGATGTTCGTCTAAGGGAGCCTCATGCAAAAAT
                      ____________________________________________________________
consensus             GAAAGGACTGTATTTCAGACCTGCTTATGATGTTCGTCTAAGGGAGCCTCATGCAAAAAT
 
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rJMSF020K01+          ATCTGGAATTATTGGTGGAACTTTTGCTGCTTGGGTTGGTGGTGGAAATAACTCTCTCAT
rJMSF032F16+          ATCTGGAATTATTGGTGGAACTTTTGCTGCTTGGGTTGGTGGTGGAAATAACTCTCTCAT
rJMSF029O05+          ATCTGGAATTATTGGTGGAACTTTTGCTGCTTGGGTTGGTGGTGGAAATAACTCTCTCAT
                      ____________________________________________________________
consensus             ATCTGGAATTATTGGTGGAACTTTTGCTGCTTGGGTTGGTGGTGGAAATAACTCTCTCAT
 
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rJMSF020K01+          TACAGAGTCAAGGGAGGATAGAGAGAACACTCCTTACTCTAGGAGGCGCCCCTTAGGTGT
rJMSF032F16+          TACAGAGTCAAGGGAGGATAGAGAGAACACTCCTTACTCTAGGAGGCGCCCCTTAGGTGT
rJMSF029O05+          TACAGAGTCAAGGGAGGATAGAGAGAACACTCCTTACTCTAGGAGGCGCCCCTTAGGTGT
                      ____________________________________________________________
consensus             TACAGAGTCAAGGGAGGATAGAGAGAACACTCCTTACTCTAGGAGGCGCCCCTTAGGTGT
 
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rJMSF020K01+          TGATTTATTTGGCTCATTTTGCTACACTCTCCAGCATGGCAAATTCAGAAAGCGATATAA
rJMSF032F16+          TGATTTATTTGGCTCATTTTGCTACACTCTCCAGCATGGCAAATTCAGAAAGCGATATAA
rJMSF029O05+          TGATTTATTTGGCTCATTTTGCTACACTCTCCAGCATGGCAAATTCAGAAAGCGATATAA
                      ____________________________________________________________
consensus             TGATTTATTTGGCTCATTTTGCTACACTCTCCAGCATGGCAAATTCAGAAAGCGATATAA
 
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rJMSF020K01+          CGACCTCACCAGAATAGATGCTCGCTTGGACGTCTCTTCTGCTGTAGCAATAGCCAAACG
rJMSF032F16+          CGACCTCACCAGAATAGATGCTCGCTTGGACGTCTCTTCTGCTGTAGCAATAGCCAAACG
rJMSF029O05+          CGACCTCACCAGAATAGATGCTCGCTTGGACGTCTCTTCTGCTGTAGCAATAGCCAAACG
                      ____________________________________________________________
consensus             CGACCTCACCAGAATAGATGCTCGCTTGGACGTCTCTTCTGCTGTAGCAATAGCCAAACG
 
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rJMSF020K01+          GGTTTCAAGAATTTTCAGAAGTGCTTCCAACACAAGAGATTCACTGTCTACCCCCAGGCT
rJMSF032F16+          GGTTTCAAGAATTTTCAGAAGTGCTTCCAACACAAGAGATTCACTGTCTACCCCCAGGCT
rJMSF029O05+          GGTTTCAAGAATTTTCAGAAGTGCTTCCAACACAAGAGATTCACTGTCTACCCCCAGGCT
                      ____________________________________________________________
consensus             GGTTTCAAGAATTTTCAGAAGTGCTTCCAACACAAGAGATTCACTGTCTACCCCCAGGCT
 
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rJMSF020K01+          GAACTTGATCTTTCAGCAGCAGGTTGCTGGACCAATCGTGTTTCGATTAGACTCAAGGTT
rJMSF032F16+          GAACTTGATCTTTCAGCAGCAGGTTGCTGGACCAATCGTGTTTCGATTAGACTCAAGGTT
rJMSF029O05+          GAACTTGATCTTTCAGCAGCAGGTTGCTGGACCAATCGTGTTTCGATTAGACTCAAGGTT
                      ____________________________________________________________
consensus             GAACTTGATCTTTCAGCAGCAGGTTGCTGGACCAATCGTGTTTCGATTAGACTCAAGGTT
 
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rJMSF020K01+          TTGTATTGATTCAATATATGGGGTACCTGTCCCAAAATTAGAAGATTATGTGCTTAGCTT
rJMSF032F16+          TTGTATTGATTCAATATATGGGGTACCTGTCCCAAAATTAGAAGATTATGTGCTTAGCTT
rJMSF029O05+          TTGTATTGATTCAATATATGGGGTACCTGTCCCAAAATTAGAAGATTATGTGCTTAGCTT
                      ____________________________________________________________
consensus             TTGTATTGATTCAATATATGGGGTACCTGTCCCAAAATTAGAAGATTATGTGCTTAGCTT
 
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rJMSF020K01+          GAACTACTCTCTTAGACTACTGCATTCTGGGAAAGTGGTGGCATGGTATTCTCCTAAGAG
rJMSF032F16+          GAACTACTCTCTTAGACTACTGCATTCTGGGAAAGTGGTGGCATGGTATTCTCCTAAGAG
rJMSF029O05+          GAACTACTCTCTTAGACTACTGCATTCTGGGAAAGTGGTGGCATGGTATTCTCCTAAGAG
                      ____________________________________________________________
consensus             GAACTACTCTCTTAGACTACTGCATTCTGGGAAAGTGGTGGCATGGTATTCTCCTAAGAG
 
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rJMSF020K01+          GAAAGAGGCCATGGTTGAGTTGCGGCTATTTGAGTTTTGAAAATCTACTTCTTGTTTAAC
rJMSF032F16+          GAAAGAGGCCATGGTTGAGTTGCGGCTATTTGAGTTTTGAAAATCTACTTCTTGTTTAAC
rJMSF029O05+          GAAAGAGGCCATGGTTGAGTTGCGGCTATTTGAGTTTTGAAAATCTACTTCTTGTTTAAC
                      ____________________________________________________________
consensus             GAAAGAGGCCATGGTTGAGTTGCGGCTATTTGAGTTTTGAAAATCTACTTCTTGTTTAAC
 
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rJMSF020K01+          TACTTTTTTGTAGTTAGGGTGGTTATGTTCGTTTGTATGCAAGCAATTCTATTGCC    
rJMSF032F16+          TACTTTTTTGTAGTTAGGGTGGTTATGTTCGTTTGTATGCAAGCAATTCTATTGCC    
rJMSF029O05+          TACTTTTTTGTAGTTAGGGTGGTTATGTTCGTTTGTATGCAAGCAATTCTATTGCCTGTG
                      ____________________________________________________________
consensus             TACTTTTTTGTAGTTAGGGTGGTTATGTTCGTTTGTATGCAAGCAATTCTATTGCCTGTG
 
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rJMSF029O05+          ACTTTCACAAGGCTTAATCTTACCATGAAGCTCTTTAAATACTCCCATTCTTTCGGTCTT
                      ____________________________________________________________
consensus             ACTTTCACAAGGCTTAATCTTACCATGAAGCTCTTTAAATACTCCCATTCTTTCGGTCTT