Contig 004288:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029I02Sequence678002298 (2)gb|ADZ29096.1|4e-1211-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]685004288 (2)ref|NP_001234728.1|6e-109ISPH protein [Solanum lycopersicum] gb|ACY27516.1| ISPH protein [Solanum lycoper
JMSF044J04Sequence761002298 (2)gb|ADZ29096.1|1e-1391-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]718004288 (2)ref|NP_001234728.1|8e-117ISPH protein [Solanum lycopersicum] gb|ACY27516.1| ISPH protein [Solanum lycoper

Alignment

This contig is upended


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rJMSF044J04+                                                                   GAA
                      ____________________________________________________________
consensus                                                                      GAA
 
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rJMSF044J04+          GCATTTCTGGAGAAATTTAAGCGGGCAGTTTCTGAAGGTTTTGATCCAGATGCCGATCTC
                      ____________________________________________________________
consensus             GCATTTCTGGAGAAATTTAAGCGGGCAGTTTCTGAAGGTTTTGATCCAGATGCCGATCTC
 
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rJMSF044J04+          TGTAAAGTTGGTATTGCTAACCAGACAACAATGTTGAAGGGAGAAACTGAAGAGATTGGA
rJMSF029I02+            TAAAGTTGGTATTGCTAACCAGACAACAATGTTGAAGGGAGAAACTGAAGAGATTGGA
                      ____________________________________________________________
consensus             TGTAAAGTTGGTATTGCTAACCAGACAACAATGTTGAAGGGAGAAACTGAAGAGATTGGA
 
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rJMSF044J04+          AAGTTAATTGAGAAGACCATGATGCGCAAGTATGGAGTGGAAAACGTCAATAACCACTTT
rJMSF029I02+          AAGTTAATTGAGAAGACCATGATGCGCAAGTATGGAGTGGAAAACGTCAATAACCACTTT
                      ____________________________________________________________
consensus             AAGTTAATTGAGAAGACCATGATGCGCAAGTATGGAGTGGAAAACGTCAATAACCACTTT
 
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rJMSF044J04+          ATGAGTTTCAACACTATTTGTGATGCTACTCAAGAGCGACAAGATGCCATGTATAAGCTA
rJMSF029I02+          ATGAGTTTCAACACTATTTGTGATGCTACTCAAGAGCGACAAGATGCCATGTATAAGCTA
                      ____________________________________________________________
consensus             ATGAGTTTCAACACTATTTGTGATGCTACTCAAGAGCGACAAGATGCCATGTATAAGCTA
 
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rJMSF044J04+          GTTGAGGACAAGCTGGATCTTATTTTGGTAATTGGTGGCTGGAACTCAAGCAACACTTCA
rJMSF029I02+          GTTGAGGACAAGCTGGATCTTATTTTGGTAATTGGTGGCTGGAACTCAAGCAACACTTCA
                      ____________________________________________________________
consensus             GTTGAGGACAAGCTGGATCTTATTTTGGTAATTGGTGGCTGGAACTCAAGCAACACTTCA
 
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rJMSF044J04+          CACCTACAGGAGATTGCAGAGGAACGTGGAATTCCATCATACTGGATTGATAGTGAGCAG
rJMSF029I02+          CACCTACAGGAGATTGCAGAGGAACGTGGAATTCCATCATACTGGATTGATAGTGAGCAG
                      ____________________________________________________________
consensus             CACCTACAGGAGATTGCAGAGGAACGTGGAATTCCATCATACTGGATTGATAGTGAGCAG
 
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rJMSF044J04+          AGAATCGGTCCTGGAAACAAAATAAGCTACAAGTTATTGCATGGTGAGTTGGTTGAGAAA
rJMSF029I02+          AGAATCGGTCCTGGAAACAAAATAAGCTACAAGTTATTGCATGGTGAGTTGGTTGAGAAA
                      ____________________________________________________________
consensus             AGAATCGGTCCTGGAAACAAAATAAGCTACAAGTTATTGCATGGTGAGTTGGTTGAGAAA
 
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rJMSF044J04+          GAGAACTTTCTGCCTGAAGGACCTCTCACAATAGGGGTAACATCTGGCGCCTCCACTCCT
rJMSF029I02+          GAGAACTTTCTGCCTGAAGGACCTCTCACAATAGGGGTAACATCTGGCGCCTCCACTCCT
                      ____________________________________________________________
consensus             GAGAACTTTCTGCCTGAAGGACCTCTCACAATAGGGGTAACATCTGGCGCCTCCACTCCT
 
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rJMSF044J04+          GATAAGGTAGTTGAAGATGCCCTTATCAAGGTGTTTGATATAAAGCGTGAAGAAGCCGTG
rJMSF029I02+          GATAAGGTAGTTGAAGATGCCCTTATCAAGGTGTTTGATATAAAGCGTGAAGAAGCCGTG
                      ____________________________________________________________
consensus             GATAAGGTAGTTGAAGATGCCCTTATCAAGGTGTTTGATATAAAGCGTGAAGAAGCCGTG
 
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rJMSF044J04+          CAA                                                         
rJMSF029I02+          CAATTGGCATAGACTAAGTCACAGTCTCGGACATTTTCAGTCCTGATTTGGCCAACCTAA
                      ____________________________________________________________
consensus             CAATTGGCATAGACTAAGTCACAGTCTCGGACATTTTCAGTCCTGATTTGGCCAACCTAA
 
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rJMSF029I02+          GAACTTAGGAGGACATGTAATTTCTGTCCACCAAGAATTTAAACGTGTGACTTGTTTGCG
                      ____________________________________________________________
consensus             GAACTTAGGAGGACATGTAATTTCTGTCCACCAAGAATTTAAACGTGTGACTTGTTTGCG
 
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rJMSF029I02+          TGTCTCTATTATATAGGTGATGTATGCATATTTAGAATAGATCTTTGTACTGAATTATCC
                      ____________________________________________________________
consensus             TGTCTCTATTATATAGGTGATGTATGCATATTTAGAATAGATCTTTGTACTGAATTATCC