Contig 004286:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042F14+                         TCAAGAACCAGTTTTACTCAGAAGGACACTTCAGAAAAAGTTCAG
                      ____________________________________________________________
consensus                            TCAAGAACCAGTTTTACTCAGAAGGACACTTCAGAAAAAGTTCAG
 
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rJMSF042F14+          GCAGTATGGATTGTGGGACAAGTACACGGAACTGTACCCTGATCAGGACTTGGTTTTTTG
                      ____________________________________________________________
consensus             GCAGTATGGATTGTGGGACAAGTACACGGAACTGTACCCTGATCAGGACTTGGTTTTTTG
 
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rJMSF042F14+          CAGTTGGAACTCGCAGTTATCAGATTGATTGGTTCTTCGCCCATGTTAATAGATATATAC
rJMSF028N20+                                               CGCCCATGTTAATAGATATATAC
                      ____________________________________________________________
consensus             CAGTTGGAACTCGCAGTTATCAGATTGATTGGTTCTTCGCCCATGTTAATAGATATATAC
 
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rJMSF042F14+          TCGGGGAAGAAGGAAACAAGACATATGTGCCGACCACATGGACAATTGAGTTCGAGGTTG
rJMSF028N20+          TC-GGGAAGAAGGAACCNAGACATATGTGCCGACCACATGGACAATTGAGTTCGAGGTTG
                      ____________________________________________________________
consensus             TCGGGGAAGAAGGAACCAAGACATATGTGCCGACCACATGGACAATTGAGTTCGAGGTTG
 
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rJMSF042F14+          ACAACGTTGATGAGTCTGGGCATTATACCCTATGGGTTGCATTGGCATCAGCACATGAAG
rJMSF028N20+          ACAACGTTGATGAGTCTGGGCATTATACCCTATGGGTTGCATTGGCATCAGCACATGAAG
                      ____________________________________________________________
consensus             ACAACGTTGATGAGTCTGGGCATTATACCCTATGGGTTGCATTGGCATCAGCACATGAAG
 
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rJMSF042F14+          CTGAATTGCAGATTAGAGTGAATGATCCAGAGGTTGAAGTCCCACATTTCACAACTGGTT
rJMSF028N20+          CTGAATTGCAGATTAGAGTGAATGATCCAGAGGTTGAAGTCCCACATTTCACAACTGGTT
                      ____________________________________________________________
consensus             CTGAATTGCAGATTAGAGTGAATGATCCAGAGGTTGAAGTCCCACATTTCACAACTGGTT
 
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rJMSF042F14+          TCATAGGCAGAGACAATGCAATTGCCAGACATGGGATTCATGGCTTGTACTGGCTATTCT
rJMSF028N20+          TCATAGGCAGAGACAATGCAATTGCCAGACATGGGATTCATGGCTTGTACTGGCTATTCT
                      ____________________________________________________________
consensus             TCATAGGCAGAGACAATGCAATTGCCAGACATGGGATTCATGGCTTGTACTGGCTATTCT
 
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rJMSF042F14+          GTGTTGATGTTCCAGGGTCTCTTCTTGCCACTGGAACCAACTCAATCTTTCTCAGGCAGA
rJMSF028N20+          GTGTTGATGTTCCAGGGTCTCTTCTTGCCACTGGAACCAACTCAATCTTTCTCAGGCAGA
                      ____________________________________________________________
consensus             GTGTTGATGTTCCAGGGTCTCTTCTTGCCACTGGAACCAACTCAATCTTTCTCAGGCAGA
 
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rJMSF042F14+          TAAGAGGCTCCAGTCCTTGGAGAGGGGTAATGTACGATTACATTCGTCTCGAAGCGCCTC
rJMSF028N20+          TAAGAGGCTCCAGTCCTTGGAGAGGGGTAATGTACGATTACATTCGTCTCGAAGCGCCTC
                      ____________________________________________________________
consensus             TAAGAGGCTCCAGTCCTTGGAGAGGGGTAATGTACGATTACATTCGTCTCGAAGCGCCTC
 
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rJMSF042F14+          CTTCAAATGATTAGTACGTTTTTCACACAATATTGTACAAGAAATGGGGCGATTCATATC
rJMSF028N20+          CTTCAAATGATTAGTACGTTTTTCACACAATATTGTACAAGAAATGGGGCGATTCATATC
                      ____________________________________________________________
consensus             CTTCAAATGATTAGTACGTTTTTCACACAATATTGTACAAGAAATGGGGCGATTCATATC
 
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rJMSF042F14+          ATCGAGCAATGAATGTGAGTTCCTTGTCTCCGGGATAAAAGAAATGAGAAATTCTTAGAT
rJMSF028N20+          ATCGAGCAATGAATGTGAGTTCCTTGTCTCCGGGATAAAAGAAATGAGAAATTCTTAGAT
                      ____________________________________________________________
consensus             ATCGAGCAATGAATGTGAGTTCCTTGTCTCCGGGATAAAAGAAATGAGAAATTCTTAGAT
 
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rJMSF042F14+          TAGAAATTATATATTGAGAGGGGTAATGTATGATTACATTCGTCTAGAAGGGCTTCCTCC
rJMSF028N20+          TAGAAATTATATATTGAGAGGGGTAATGTATGATTACATTCGTCTAGAAGGGCTTCCTCC
                      ____________________________________________________________
consensus             TAGAAATTATATATTGAGAGGGGTAATGTATGATTACATTCGTCTAGAAGGGCTTCCTCC
 
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rJMSF042F14+          AAATCATTAGTTTTACATACAACATTGTACAAGAAATAGGAAATTCACATTAGGATAGTG
rJMSF028N20+          AAATCATTAGTTTTACATACAACATTGTACAAGAAATAGGAAATTCACATTAGGATAGTG
                      ____________________________________________________________
consensus             AAATCATTAGTTTTACATACAACATTGTACAAGAAATAGGAAATTCACATTAGGATAGTG
 
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rJMSF042F14+          GCTGTGGATTTTCAAGATAAAAGAAATGGGGAATTTTTATATTAGAAAGTGTACCATGGC
rJMSF028N20+          GCTGTGGATTTTCAAGATAAAAGAATTGGGGAATTTTTATATTAGAAAGTGTACCATGGC
                      ____________________________________________________________
consensus             GCTGTGGATTTTCAAGATAAAAGAATTGGGGAATTTTTATATTAGAAAGTGTACCATGGC
 
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rJMSF042F14+          CTATGTTGCTTAGCATGTTTGGAGGC                                  
rJMSF028N20+          CTATGTTGCTTAGCATGTTTGGAGGCTAGTAGATGGTAATGCATGCAGTATTGCAATTTG
                      ____________________________________________________________
consensus             CTATGTTGCTTAGCATGTTTGGAGGCTAGTAGATGGTAATGCATGCAGTATTGCAATTTG