Contig 004282:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027P20Sequence653004282 (2)ref|XP_002534120.1|2e-55ef-hand calcium binding protein, putative [Ricinus communis] gb|EEF28264.1| ef-h716004282 (2)emb|CDP14167.1|3e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF027P20-                             GGTTTTCCGTCTCTCGTACTTGCTGCGAAAAACAAAAAAAAT
                      ____________________________________________________________
consensus                               GGTTTTCCGTCTCTCGTACTTGCTGCGAAAAACAAAAAAAAT
 
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JMSF027P20-           GTCAGGATATCCCAATCCAAATTCTCACGGCTACGGTTACAGCGCTCCGCCGCCGTCTCA
                      ____________________________________________________________
consensus             GTCAGGATATCCCAATCCAAATTCTCACGGCTACGGTTACAGCGCTCCGCCGCCGTCTCA
 
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JMSF027P20-           GCCGTACAGCGTTCCGCCGCCGTCCCAGTCGTACAGCGTTCCACCGCCGTCCCAGGCGTA
                      ____________________________________________________________
consensus             GCCGTACAGCGTTCCGCCGCCGTCCCAGTCGTACAGCGTTCCACCGCCGTCCCAGGCGTA
 
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JMSF027P20-           CTCATCAGCTCCCTACGGCGTTCCACCGCCATCTTCCGCATACGGGGCCCCACCACCGGG
                      ____________________________________________________________
consensus             CTCATCAGCTCCCTACGGCGTTCCACCGCCATCTTCCGCATACGGGGCCCCACCACCGGG
 
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JMSF027P20-           CCAATCTCCTTACGCGCCCGTAGCCTCTCCGTACTCGGCTCCCTCGGCCCCCTACGCGTC
                      ____________________________________________________________
consensus             CCAATCTCCTTACGCGCCCGTAGCCTCTCCGTACTCGGCTCCCTCGGCCCCCTACGCGTC
 
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JMSF027P20-           CGATCCCACCAAGCCCCCGAAGGAGAACAAACCCCAATCCTCTGGCCATTATGGCGGTGG
                      ____________________________________________________________
consensus             CGATCCCACCAAGCCCCCGAAGGAGAACAAACCCCAATCCTCTGGCCATTATGGCGGTGG
 
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JMSF027P20-           CTACCCCACCGCTCCCCCTTCGGCGCCGTACGGCAGTGCCCCCTTTGGTTCTCACGTCCC
                      ____________________________________________________________
consensus             CTACCCCACCGCTCCCCCTTCGGCGCCGTACGGCAGTGCCCCCTTTGGTTCTCACGTCCC
 
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JMSF027P20-           CTCCTCTTTCCCGCCCGGCACCGATCCGAACGTGGTGGCTTGCTTTCAGATGGCCGATCA
rJMSF027P20+              TCTTTCCCGCCCGGCACCGATCCGAACGTGGTGGCTTGCTTTCAGATGGCCGATCA
                      ____________________________________________________________
consensus             CTCCTCTTTCCCGCCCGGCACCGATCCGAACGTGGTGGCTTGCTTTCAGATGGCCGATCA
 
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JMSF027P20-           GGATGGAAGCGGCATGATCGACGATAAGGAGCTGCAAGGGGCGCTTTCCTCGTATAATCA
rJMSF027P20+          GGATGGAAGCGGCATGATCGACGATAAGGAGCTGCAAGGGGCGCTTTCCTCGTATAATCA
                      ____________________________________________________________
consensus             GGATGGAAGCGGCATGATCGACGATAAGGAGCTGCAAGGGGCGCTTTCCTCGTATAATCA
 
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JMSF027P20-           TCAGAGCTTTAGCATGAGGACAGTTCATCTTCTCATGTATCTGTTCACGAACACCAACAC
rJMSF027P20+          TCAGAGCTTTAGCATGAGGACAGTTCATCTTCTCATGTATCTGTTCACGAACACCAACAC
                      ____________________________________________________________
consensus             TCAGAGCTTTAGCATGAGGACAGTTCATCTTCTCATGTATCTGTTCACGAACACCAACAC
 
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JMSF027P20-           CCGTAAAATTGGTCCAAAAGAATTTACTGCAGTCTTCTACAGTCTACAAAACTGGAGGGC
rJMSF027P20+          CCGTAAAATTGGTCCAAAAGAATTTACTGCAGTCTTCTACAGTCTACAAAACTGGAGGGC
                      ____________________________________________________________
consensus             CCGTAAAATTGGTCCAAAAGAATTTACTGCAGTCTTCTACAGTCTACAAAACTGGAGGGC
 
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JMSF027P20-           AATTTTTGAGA                                                 
rJMSF027P20+          AATTTTTGAGAGATTTGACAGGGATCGGAGTGGCAAAATTGATACTACAGAATTAAGGGA
                      ____________________________________________________________
consensus             AATTTTTGAGAGATTTGACAGGGATCGGAGTGGCAAAATTGATACTACAGAATTAAGGGA
 
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rJMSF027P20+          GGCCCTCTTGAGCTTGGGATTTGCAGTATCACCTGCAGTTTTAGAGTTGTTGGTGACCAA
                      ____________________________________________________________
consensus             GGCCCTCTTGAGCTTGGGATTTGCAGTATCACCTGCAGTTTTAGAGTTGTTGGTGACCAA
 
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rJMSF027P20+          ATTTGATAAAACCGGTGGACATAACAAGGCCATTGAATACGATAATTTCATCGAGTGCTG
                      ____________________________________________________________
consensus             ATTTGATAAAACCGGTGGACATAACAAGGCCATTGAATACGATAATTTCATCGAGTGCTG
 
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rJMSF027P20+          CCTCACAGTGAAGGGGCTGACCGAGAAATTTAAGGATAAGGACACTGGGTATACTGGTTC
                      ____________________________________________________________
consensus             CCTCACAGTGAAGGGGCTGACCGAGAAATTTAAGGATAAGGACACTGGGTATACTGGTTC
 
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rJMSF027P20+          AGCAACTTTCACCTATGAAGCTTTCATGTTGACAGTTCTGCCTTTCCTGATTGCATAGAG
                      ____________________________________________________________
consensus             AGCAACTTTCACCTATGAAGCTTTCATGTTGACAGTTCTGCCTTTCCTGATTGCATAGAG
 
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rJMSF027P20+          ATGAGATGTGTACATGAGTTGAGTATGGTTTGTTTGATAGAAGCCTGCAGCAGCTTCCAT
                      ____________________________________________________________
consensus             ATGAGATGTGTACATGAGTTGAGTATGGTTTGTTTGATAGAAGCCTGCAGCAGCTTCCAT
 
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rJMSF027P20+          TTAAATGGTTTAATTTTCGTATTATGCAATCTTTCATTTTCATTAGTTGTATTTTGCTTA
                      ____________________________________________________________
consensus             TTAAATGGTTTAATTTTCGTATTATGCAATCTTTCATTTTCATTAGTTGTATTTTGCTTA
 
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rJMSF027P20+          GTAGTAACGTTGGAGGTAATCTTGTATTGTGTCATGTTTCCTACTTGCACTTCTCTCCTT
                      ____________________________________________________________
consensus             GTAGTAACGTTGGAGGTAATCTTGTATTGTGTCATGTTTCCTACTTGCACTTCTCTCCTT