Contig 004281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022F08Sequence616009101 (3)ref|XP_002274030.1|3e-20PREDICTED: mucin-17 [Vitis vinifera] emb|CBI25498.3| unnamed protein product [Vi654004281 (2)gb|KDO69021.1|4e-53hypothetical protein CISIN_1g026936mg [Citrus sinensis]
JMSF027N19Sequence664016797ref|XP_011035974.1|1e-41PREDICTED: mucin-5AC-like [Populus euphratica]760004281 (2)ref|XP_009603323.1|3e-65PREDICTED: mucin-5B-like isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF022F08+                                                             CCAGNTATG
rJMSF027N19+                              AATACATAGCAGTGGAAGCGCTGNTCCCATTCCAGCTATG
                      ____________________________________________________________
consensus                                 AATACATAGCAGTGGAAGCGCTGNTCCCATTCCAGCTATG
 
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rJMSF022F08+          AGCCGGTTACATGCTAAAGNTAATGACAATGTGAGCCCTGTTGTGATTGGAACTAAGATG
rJMSF027N19+          AGCCGGTTACATGCTAAAGCTAATGACAATGTGAGCCCTGTTGTGATTGGAACTAAGATG
                      ____________________________________________________________
consensus             AGCCGGTTACATGCTAAAGCTAATGACAATGTGAGCCCTGTTGTGATTGGAACTAAGATG
 
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rJMSF022F08+          GTTGAAAGAGTGATAAATATGCGGAAATTGGCTCCGCCAAAACAAGAGAATAAACATTCC
rJMSF027N19+          GTTGAAAGAGTGATAAATATGCGGAAATTGGCTCCGCCAAAACAAGAGAATAAACATTCC
                      ____________________________________________________________
consensus             GTTGAAAGAGTGATAAATATGCGGAAATTGGCTCCGCCAAAACAAGAGAATAAACATTCC
 
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rJMSF022F08+          CCGAATAGTAATTGGTCTGCCAAGTCCTCATCACNTGNCAGCTCGGGCTNTGGAAGAAAT
rJMSF027N19+          CCGAATAGTAATTTGTCTGCCAAGTCCTCATCACCTGACAGCTCGGGCTTTGGAAGAAAT
                      ____________________________________________________________
consensus             CCGAATAGTAATTTGTCTGCCAAGTCCTCATCACCTGACAGCTCGGGCTTTGGAAGAAAT
 
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rJMSF022F08+          CTCTNTNAAAAGTCNTNGGATATGGCCNTTAGGCATATGGATATAAGGCGAACAATTCCA
rJMSF027N19+          CTCTCTAAAAAGTCTTTGGATATGGCCATTAGGCATATGGATATAAGGCGAACAATTCCA
                      ____________________________________________________________
consensus             CTCTCTAAAAAGTCTTTGGATATGGCCATTAGGCATATGGATATAAGGCGAACAATTCCA
 
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rJMSF022F08+          GGTAATCTNCGACCATTGATGGCTAATATTCCAGCATCATCTATGTACAGTGTGAGAACA
rJMSF027N19+          GGTAATCTACGACCATTGATGGCTAATATTCCAGCATCATCTATGTACAGTGTGAGAACA
                      ____________________________________________________________
consensus             GGTAATCTACGACCATTGATGGCTAATATTCCAGCATCATCTATGTACAGTGTGAGAACA
 
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rJMSF022F08+          GGACCTAATAGAAGCAGGGCAGTGAGCGTTTCTGATTCACCACACGCAACAAGCAGTAAT
rJMSF027N19+          GGACCTAATAGAAGCAGGGCAGTGAGCGTTTCTGATTCACCACACGCAACAAGCAGTAAT
                      ____________________________________________________________
consensus             GGACCTAATAGAAGCAGGGCAGTGAGCGTTTCTGATTCACCACACGCAACAAGCAGTAAT
 
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rJMSF022F08+          GCTAGTTCCGAAGTCAGCGTTAATAACAATGC                            
rJMSF027N19+          GCTAGTTCCGAAGTCAGCGTTAATAACAATGCCCTTTGCACCGATGGAAATGAAGTTGAT
                      ____________________________________________________________
consensus             GCTAGTTCCGAAGTCAGCGTTAATAACAATGCCCTTTGCACCGATGGAAATGAAGTTGAT
 
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rJMSF027N19+          GATGATATTTGCAGCTATAGAATTGCTCACTCCCCTGCCACGATGCGTGGTAGGTGATGC
                      ____________________________________________________________
consensus             GATGATATTTGCAGCTATAGAATTGCTCACTCCCCTGCCACGATGCGTGGTAGGTGATGC
 
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rJMSF027N19+          TCGGCTTGTCTTGTTGAAACAGTCGAGCGTTCAAGCATCCTTGTCTCCACGAGAACCGAG
                      ____________________________________________________________
consensus             TCGGCTTGTCTTGTTGAAACAGTCGAGCGTTCAAGCATCCTTGTCTCCACGAGAACCGAG
 
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rJMSF027N19+          TATGGATATGGGTATGGCTATGTAAAGGTGCATGCATTGGTTAGATGTTGTAATTGGAAG
                      ____________________________________________________________
consensus             TATGGATATGGGTATGGCTATGTAAAGGTGCATGCATTGGTTAGATGTTGTAATTGGAAG
 
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rJMSF027N19+          GTCTTGTATTATTAGAAATCCCAGTTATGGTGAAACCATTGCCCTCTTGTTCATGACAAA
                      ____________________________________________________________
consensus             GTCTTGTATTATTAGAAATCCCAGTTATGGTGAAACCATTGCCCTCTTGTTCATGACAAA
 
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rJMSF027N19+          AGATTATATGTTGAACTAGCCTCTGGTTTCACTTGGAGAACATGTGAGATTGCTGCCTGC
                      ____________________________________________________________
consensus             AGATTATATGTTGAACTAGCCTCTGGTTTCACTTGGAGAACATGTGAGATTGCTGCCTGC