Contig 004275:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025A17Sequence643007907 (2)ref|XP_011086640.1|4e-29PREDICTED: plant intracellular Ras-group-related LRR protein 3-like [Sesamum in638004275 (2)ref|XP_006483949.1|2e-49PREDICTED: plant intracellular Ras-group-related LRR protein 3-like isoform X1
JMSF025N13Sequence609007907 (2)ref|XP_011086640.1|5e-35PREDICTED: plant intracellular Ras-group-related LRR protein 3-like [Sesamum in774004275 (2)ref|XP_006483949.1|2e-47PREDICTED: plant intracellular Ras-group-related LRR protein 3-like isoform X1

Alignment

This contig is upended


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rJMSF025A17+                   TTAGACGTGCATTTCAATGAGCTCCACGGCCTGCCGGCGGCAATCGGCATG
rJMSF025N13+                TACTTAGACGTGCANTTCNATGAGCTCCACGGCCTGCCGGCGGCAATCGGCATG
                      ____________________________________________________________
consensus                   TACTTAGACGTGCATTTCAATGAGCTCCACGGCCTGCCGGCGGCAATCGGCATG
 
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rJMSF025A17+          CTCACCAATCTTGAGTTCTTGAACGCCAGCAGCAACTTCAACGATCTGAAAGAACTCCCA
rJMSF025N13+          CTCACCAATCTTGAGTTCTTGAACGCCAGCAGCAACTTCAACGATCTGAAAGAACTCCCA
                      ____________________________________________________________
consensus             CTCACCAATCTTGAGTTCTTGAACGCCAGCAGCAACTTCAACGATCTGAAAGAACTCCCA
 
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rJMSF025A17+          GAAACAATCTGCAATGTCGCGAATCTGAAAGAGCTGGATCTGAGTAACAACCAAATCCGC
rJMSF025N13+          GAAACAATCTGCAATGTCGCGAATCTGAAAGAGCTGGATCTGAGTAACAACCAAATCCGC
                      ____________________________________________________________
consensus             GAAACAATCTGCAATGTCGCGAATCTGAAAGAGCTGGATCTGAGTAACAACCAAATCCGC
 
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rJMSF025A17+          GTCCTCCCGGACGGATTTTACCAGCTGGAGAACCTCTCCAGGCTGAATTTGGATCAGAAT
rJMSF025N13+          GTCCTCCCGGACGGATTTTACCAGCTGGAGAACCTCTCCAGGCTGAATTTGGATCAGAAT
                      ____________________________________________________________
consensus             GTCCTCCCGGACGGATTTTACCAGCTGGAGAACCTCTCCAGGCTGAATTTGGATCAGAAT
 
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rJMSF025A17+          CCGCTGGTAATTCCGCCGGCGGAGATAGGGAAGGAAGGGGAGGAAGCCGTGAAGGAGTTC
rJMSF025N13+          CCGCTGGTAATTCCGCCGGCGGAGATAGGGAAGGAAGGGGAGGAAGCCGTGAAGGAGTTC
                      ____________________________________________________________
consensus             CCGCTGGTAATTCCGCCGGCGGAGATAGGGAAGGAAGGGGAGGAAGCCGTGAAGGAGTTC
 
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rJMSF025A17+          ATGAGGAAGAGGATGATGGAGATGATGGCGGCGGCGGAGGAGAGGATGACGGCGGAAGCG
rJMSF025N13+          ATGAGGAAGAGGATGATGGAGATGATGGCGGCGGCGGAGGAGAGGATGACGGCGGAAGCG
                      ____________________________________________________________
consensus             ATGAGGAAGAGGATGATGGAGATGATGGCGGCGGCGGAGGAGAGGATGACGGCGGAAGCG
 
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rJMSF025A17+          AATAAGGAAACGCAGACAGGGTGGTTGACTTGGGGTTCATCAATGGTGAATAGCCTGGTT
rJMSF025N13+          AATAAGGAAACGCAGACAGGGTGGTTGACTTGGGGTTCATCAATGGTGAATAGCCTGGTT
                      ____________________________________________________________
consensus             AATAAGGAAACGCAGACAGGGTGGTTGACTTGGGGTTCATCAATGGTGAATAGCCTGGTT
 
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rJMSF025A17+          TCCGAGGTTTCTCGGGGATATTCAGATTACTTTGGAGGGAATGCTCCCAGTCCTAGTCCC
rJMSF025N13+          TCCGAGGTTTCTCGGGGATATTCAGATTACTTTGGAGGGAATGCTCCCAGTCCTAGTCCC
                      ____________________________________________________________
consensus             TCCGAGGTTTCTCGGGGATATTCAGATTACTTTGGAGGGAATGCTCCCAGTCCTAGTCCC
 
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rJMSF025A17+          AGTCCCAGGGCCGGGGATCCCTTTTTGGATCACCCGCGATGAGATAATCCCCATAATGCC
rJMSF025N13+          AGTCCCAGGGCCGGGGATCCCTTTTTGGATCACCCGCGATGAGATAATCCCCATAATGCC
                      ____________________________________________________________
consensus             AGTCCCAGGGCCGGGGATCCCTTTTTGGATCACCCGCGATGAGATAATCCCCATAATGCC
 
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rJMSF025A17+          CTTTCGGGTAGCGGTTGTGAGTTTACTTTTGTCACAAATCTTCAGGCCAACTGATCCACC
rJMSF025N13+          CTTTCGGGTAGCGGTTGTGAGTTTACTTTTGTCACAAATCTTCAGGCCAACTGATCCACC
                      ____________________________________________________________
consensus             CTTTCGGGTAGCGGTTGTGAGTTTACTTTTGTCACAAATCTTCAGGCCAACTGATCCACC
 
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rJMSF025A17+          CAAAAGAGGTGTCTATAATTCAACAAGGGAATTAGTGTGTTCGACAA             
rJMSF025N13+          CAAAAGAGGTGTCTATAATTCAACAAGGGAATTAGTGTGTTCGACAATAAAAACCTTGGA
                      ____________________________________________________________
consensus             CAAAAGAGGTGTCTATAATTCAACAAGGGAATTAGTGTGTTCGACAATAAAAACCTTGGA
 
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rJMSF025N13+          TATACCCAACAAATAAATCATATCCAAATACATTTAAAACAACACGAATTTGTTCCGAAC
                      ____________________________________________________________
consensus             TATACCCAACAAATAAATCATATCCAAATACATTTAAAACAACACGAATTTGTTCCGAAC
 
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rJMSF025N13+          ATAAGTTAATAATACTTGTTTTCATTTACTGTGGACCATAGTGCATGTAGCAGTGTGGTT
                      ____________________________________________________________
consensus             ATAAGTTAATAATACTTGTTTTCATTTACTGTGGACCATAGTGCATGTAGCAGTGTGGTT