| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF025C06 | Sequence | 657 | 010257 (5) | gb|KDO66921.1| | 8e-50 | hypothetical protein CISIN_1g010845mg [Citrus sinensis] | 669 | 004270 (3) | ref|XP_010032983.1| | 9e-36 | PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochond |
| JMSF041A14 | Sequence | 534 | 010257 (5) | gb|KDO66921.1| | 4e-60 | hypothetical protein CISIN_1g010845mg [Citrus sinensis] | 634 | 004270 (3) | gb|EYU36039.1| | 3e-48 | hypothetical protein MIMGU_mgv1a004976mg [Erythranthe guttata] |
| JMSF043G16 | Sequence | 792 | 010257 (5) | ref|XP_009783220.1| | 7e-110 | PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochond | 739 | 004270 (3) | emb|CDP09204.1| | 1e-79 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF043G16+ TTGTGGAATCTCTGG
____________________________________________________________
consensus TTGTGGAATCTCTGG
. : . : . : . : . : . :
rJMSF043G16+ ATATTCCAAATCTCATGGAAGGATTGGAGTTGATGAATGGCTACGTGTCCCTAGCGTGCA
____________________________________________________________
consensus ATATTCCAAATCTCATGGAAGGATTGGAGTTGATGAATGGCTACGTGTCCCTAGCGTGCA
. : . : . : . : . : . :
rJMSF043G16+ GGATGTATTTGCAATCGGGGACTGTTGTGGCTTCCTCGAAAGTACAGGCAAGCCCGTACT
____________________________________________________________
consensus GGATGTATTTGCAATCGGGGACTGTTGTGGCTTCCTCGAAAGTACAGGCAAGCCCGTACT
. : . : . : . : . : . :
rJMSF043G16+ TCCAGCCTTGGCTCAGGTTGCAGAACGTCAAGGAAAGTATCTGGCAACGCTAGTGAACCA
rJMSF025C06+ AGTGAACCA
____________________________________________________________
consensus TCCAGCCTTGGCTCAGGTTGCAGAACGTCAAGGAAAGTATCTGGCAACGCTAGTGAACCA
. : . : . : . : . : . :
rJMSF043G16+ AATTGGCAAAGCTGGCGGGGGGAAAGCAAATGCTGCCAAGGATTTGGACCTCGGGGATCA
rJMSF041A14+ AAGCNGGCGGGGGGGAAGCAAATGCTGCCAAGGATTTGGACCTCGGGGATCA
rJMSF025C06+ AATTGGCAAAGCTGGCGGGGGGAAAGCAAANGCTGCCAAGGATTTGGACCTCGGGGATCA
____________________________________________________________
consensus AATTGGCAAAGCTGGCGGGGGGAAAGCAAATGCTGCCAAGGATTTGGACCTCGGGGATCA
. : . : . : . : . : . :
rJMSF043G16+ ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGCGCTTGTTGA
rJMSF041A14+ ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGCGCTTGTTGA
rJMSF025C06+ ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGTGCTNGTTGA
____________________________________________________________
consensus ATTCGTTTATAGGCATTTGGGCAGCATGGCAACCATAGGCCGGTATAAGGCGCTTGTTGA
. : . : . : . : . : . :
rJMSF043G16+ CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGGTTTAT
rJMSF041A14+ CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGGTTTAT
rJMSF025C06+ CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGTTTTAT
____________________________________________________________
consensus CCTTAGGCAGAGCAAGGAGGCGAAAGGCGTATCGATGGCAGGATTCACAAGCTGGTTTAT
. : . : . : . : . : . :
rJMSF043G16+ TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
rJMSF041A14+ TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
rJMSF025C06+ TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
____________________________________________________________
consensus TTGGCGCTCGGCTTACCTGACTCGTGTGGTCAGCTGGAGAAACAGATTCTACGTCGCTAT
. : . : . : . : . : . :
rJMSF043G16+ CAACTGGTTGACGACTTTGGTGTTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
rJMSF041A14+ CAACTGGTTGACGACTTTGGTGTTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
rJMSF025C06+ CAACTGGTTGACGACTTTGGTGNTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
____________________________________________________________
consensus CAACTGGTTGACGACTTTGGTGTTTGGTCGTGATATCAGTCGGATATAAGAAACGAACGA
. : . : . : . : . : . :
rJMSF043G16+ CCAAAAGGCGCCCTCGGTTCATGCCTCCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
rJMSF041A14+ CCAAAAGGCGCCCTCGGTTCATGCCTGCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
rJMSF025C06+ CCAAAAGGCGCCCTCGGTTCATGCCTGCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
____________________________________________________________
consensus CCAAAAGGCGCCCTCGGTTCATGCCTGCAGAAACGCACCGCGATTTGCTGCTGCTCGAGC
. : . : . : . : . : . :
rJMSF043G16+ TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
rJMSF041A14+ TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
rJMSF025C06+ TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
____________________________________________________________
consensus TCAGTTCTGGTAAAATCCTTCTTCTTGTTGCAGGAAATCTTTTTACAAGTTCATGTTTTC
. : . : . : . : . : . :
rJMSF043G16+ CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
rJMSF041A14+ CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
rJMSF025C06+ CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
____________________________________________________________
consensus CTCCATCCTCTTCATCATCACACCGTTGCAATGAATCATTACTGCAGATGAAAAGAATAA
. : . : . : . : . : . :
rJMSF043G16+ CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
rJMSF041A14+ CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
rJMSF025C06+ CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
____________________________________________________________
consensus CTTCTTGCAATTCAGAGTTCTTTGTTTCTTACTTTTCTTGCCTTCTTTTTCATCTGTAAA
. : . : . : . : . : . :
rJMSF043G16+ TCTT
rJMSF041A14+ TCTTTGCCAAACAGAATTATTTTACTTGTATAATTTGTGTTGATCCTGCATCCCCCCTCC
rJMSF025C06+ TCTTNGCCAAACAGAATTATTTTACTNGTATAATTTGTGTTGATCCTGCATCCCCCCTCC
____________________________________________________________
consensus TCTTTGCCAAACAGAATTATTTTACTTGTATAATTTGTGTTGATCCTGCATCCCCCCTCC
. : . : . : . : . : . :
rJMSF041A14+ CCTCTTTTTTACTTGGAAGTGGATAGATTTCCTTATTAACTT
rJMSF025C06+ CCTCTTTTTTACTTGGAAGTGGATAGATTTCCTTATTAACTTTCTTAGTTAGAATCAATA
____________________________________________________________
consensus CCTCTTTTTTACTTGGAAGTGGATAGATTTCCTTATTAACTTTCTTAGTTAGAATCAATA