Contig 004268:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+                                     ATTTAAGTACACATTAATAAGAAAAAGTGTATG
rJMSF024H13+                                                              AGTGTATG
                      ____________________________________________________________
consensus                                        ATTTAAGTACACATTAATAAGAAAAAGTGTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          CAATTATGCTTAAATTTTTATAACATGTCACAGTTATTTAAAAACTGATTTAGTTGCCAA
rJMSF024H13+          CAATTATGCTTAAATTTTTATAACATGTCACAGTTATTTAAAAACTGATTTAGTTGCCAA
                      ____________________________________________________________
consensus             CAATTATGCTTAAATTTTTATAACATGTCACAGTTATTTAAAAACTGATTTAGTTGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TTTGAATAAGTATATGAGTTTTCCTTTATTTGAAAACACTAAATATTTATTTTTTTGCAG
rJMSF024H13+          TTTGAATAAGTATATGAGTTTTCCTTTATTTGAAAACACTAAATATTTATTTTTTTGCAG
                      ____________________________________________________________
consensus             TTTGAATAAGTATATGAGTTTTCCTTTATTTGAAAACACTAAATATTTATTTTTTTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          GGCATCTCGTAAATTGGGGCATCAAATAAAAACTAATAATCTCTACCACTGCAATATGAG
rJMSF024H13+          GGCATCTCGTAAATTGGGGCATCAAATAAAAACTAATAATCTCTACCACTGCAATATGAG
                      ____________________________________________________________
consensus             GGCATCTCGTAAATTGGGGCATCAAATAAAAACTAATAATCTCTACCACTGCAATATGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          CTAAGCTGTTGAGGTTGATGATTTCGAATAAAATATGCCTGTTGATGATTTCAAATAAAA
rJMSF024H13+          CTAAGCTGTTGAGGTTGATGATTTCGAATAAAATATGCCTGTTGATGATTTCAAATAAAA
                      ____________________________________________________________
consensus             CTAAGCTGTTGAGGTTGATGATTTCGAATAAAATATGCCTGTTGATGATTTCAAATAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TATGCCCCAAACTTAACAGTGGGAATCCCACAGAGTATGCAGAAAAGATCATTTTAGGTT
rJMSF024H13+          TATGCCCCAAACTTAACAGTGGGAATCCCACAGAGTATGCAGAAAAGATCATTTTAGGTT
                      ____________________________________________________________
consensus             TATGCCCCAAACTTAACAGTGGGAATCCCACAGAGTATGCAGAAAAGATCATTTTAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TTGAATTGATGTTCAAATTTGTCTAAGAGACAGAGAATACACATTGGTGGTAATGTATTC
rJMSF024H13+          TTGAATTGATGTTCAAATTTGTCTAAGAGACAGAGAATACACATTGGTGGTAATGTATTC
                      ____________________________________________________________
consensus             TTGAATTGATGTTCAAATTTGTCTAAGAGACAGAGAATACACATTGGTGGTAATGTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TATGTGTAACAGACATAGAATACACATTGGTGGTAATGTTTTGACAGCCCAAGAAGGTTT
rJMSF024H13+          TATGTGTAACAGACATAGAATACACATTGGTGGTAATGTTTTGACAGCCCAAGAAGGTTT
                      ____________________________________________________________
consensus             TATGTGTAACAGACATAGAATACACATTGGTGGTAATGTTTTGACAGCCCAAGAAGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TGGCAAAGAAGTTCCACTTCCATGTGCTTTGGCTACGGCTGTGGAGTAGATATTGGACGT
rJMSF024H13+          TGGCAAAGAAGTTCCACTTCCATGTGCTTTGGCTACGGCTGTGGAGTAGATATTGGACGT
                      ____________________________________________________________
consensus             TGGCAAAGAAGTTCCACTTCCATGTGCTTTGGCTACGGCTGTGGAGTAGATATTGGACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TTTCCCTGCTGGTAAGCTCTAATTCGACGCTGATACCTTTTCGGCGAGGCTTCAGGTATA
rJMSF024H13+          TTTCCCTGCTGGTAAGCTCTAATTCGACGCTGATACCTTTTCGGCGAGGCTTCAGGTATA
                      ____________________________________________________________
consensus             TTTCCCTGCTGGTAAGCTCTAATTCGACGCTGATACCTTTTCGGCGAGGCTTCAGGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          ATTCGGCTGATCCCTTTTCGGCGAGGCTTCGACGCTGCTCCGTTTCTGGCGAGACTTCTG
rJMSF024H13+          ATTCGGCTGATCCCTTTTCGGCGAGGCTTCGACGCTGCTCCGTTTCTGGCGAGACTTCTG
                      ____________________________________________________________
consensus             ATTCGGCTGATCCCTTTTCGGCGAGGCTTCGACGCTGCTCCGTTTCTGGCGAGACTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          GTATAACTGCTGGCCTGCATGATTTAGTATTTGTATTGAAGACTGAAACTTGATAGTCTT
rJMSF024H13+          GTATAACTGCTGGCCTGCATGATTTAGTATTTGTATTGAAGACTGAAACTTGATAGTCTT
                      ____________________________________________________________
consensus             GTATAACTGCTGGCCTGCATGATTTAGTATTTGTATTGAAGACTGAAACTTGATAGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          TGCATTGAAGAGAAAGTGATGTATATATAGAGGTTTAGATATAATTGCTTCCCTACCGTT
rJMSF024H13+          TGCATTGAAGAGAAAGTGATGTATATATAGAGGTTTAGATATAATTGCTTCCCTACCGTT
                      ____________________________________________________________
consensus             TGCATTGAAGAGAAAGTGATGTATATATAGAGGTTTAGATATAATTGCTTCCCTACCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E14+          AG-TAACGAAAGGGCAGAAATCGAT                                   
rJMSF024H13+          AGTTAACGAAAGGGCAGAAATCGATTGGTCTGCAATTAATTACTTGGAAAGACAAATCCG
                      ____________________________________________________________
consensus             AGTTAACGAAAGGGCAGAAATCGATTGGTCTGCAATTAATTACTTGGAAAGACAAATCCG