Contig 004266:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023E13Sequence294016774767004266 (2)ref|XP_009616647.1|8e-69PREDICTED: vacuolar-sorting receptor 6-like [Nicotiana tomentosiformis]
JMSF044E09Sequence798016864ref|XP_004232618.1|4e-97PREDICTED: vacuolar-sorting receptor 6-like [Solanum lycopersicum]839004266 (2)ref|XP_009794444.1|2e-110PREDICTED: vacuolar-sorting receptor 6-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF044E09+                                                               AATGGCG
                      ____________________________________________________________
consensus                                                                  AATGGCG
 
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rJMSF044E09+          GGTGCTGGCATGATCCAAAATCTAACGTAACAGCCTGCAAGGACACATTTAGGGGAAGAG
                      ____________________________________________________________
consensus             GGTGCTGGCATGATCCAAAATCTAACGTAACAGCCTGCAAGGACACATTTAGGGGAAGAG
 
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rJMSF044E09+          TATGCGAGTGCCCATCGATGAATGGTGTTCAGTACAAA-GGAGACGGATATACATCATGT
rJMSF023E13+                      CATCGATGAATGGTGTTCAGTACAAAGGGAGACGGATATACATCATGT
                      ____________________________________________________________
consensus             TATGCGAGTGCCCATCGATGAATGGTGTTCAGTACAAAGGGAGACGGATATACATCATGT
 
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rJMSF044E09+          GAAGCTGTTGGACCTGGAAGGTGCACGGTAAATAATGGCGGTTGCTGGTCAGAGACAAAA
rJMSF023E13+          GAAGCTGTTGGACCTGGAAGGTGCACGGTAAATAATGGCGG-TGCTGGTCAGAGACAAAA
                      ____________________________________________________________
consensus             GAAGCTGTTGGACCTGGAAGGTGCACGGTAAATAATGGCGGTTGCTGGTCAGAGACAAAA
 
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rJMSF044E09+          GACAGAACAACTTTTTCTGCTTGCTCAGAAGCTCTTATTACCGGCTGTAAATGTCCCTAT
rJMSF023E13+          GACAGAACAACTTTTTCTGCTTGCTCAGAAGCTCTTATTACCGGCTGTAAATGTCCCTAT
                      ____________________________________________________________
consensus             GACAGAACAACTTTTTCTGCTTGCTCAGAAGCTCTTATTACCGGCTGTAAATGTCCCTAT
 
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rJMSF044E09+          GGCTTTAAAGGGGATGGCCATAAATGTGAAGATGTAGACGAATGTAAGGAAGGCACGGTT
rJMSF023E13+          GGCTTTAAAGGGGATGGCCATAAATGTGAAGATGTAGACGAATGTAAGGAAGGCACGGTT
                      ____________________________________________________________
consensus             GGCTTTAAAGGGGATGGCCATAAATGTGAAGATGTAGACGAATGTAAGGAAGGCACGGTT
 
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rJMSF044E09+          TGTCAGTGTGATGGTTGCAAGTGTAAGAACACATGGGGTGGATATGACTGCAAATGTAAA
rJMSF023E13+          TGTCAGTGTGATGGTTGCAAGTGTAAGAACACATGGGGTGGATATGACTGCAAATGTAAA
                      ____________________________________________________________
consensus             TGTCAGTGTGATGGTTGCAAGTGTAAGAACACATGGGGTGGATATGACTGCAAATGTAAA
 
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rJMSF044E09+          GGAGATAAATTGTATATAATGGAGCATGACACATGCATTGAAAGACAGTCATCAAAACTT
rJMSF023E13+          GGAGATAAATTGTATATAATGGAGCATGACACATGCATTGAAAGACAGTCATCAAAACTT
                      ____________________________________________________________
consensus             GGAGATAAATTGTATATAATGGAGCATGACACATGCATTGAAAGACAGTCATCAAAACTT
 
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rJMSF044E09+          GGAGGCTTCCTAACTTTTGCGGTTATAGCTGTTGTACTTGGTGCTGGAATAGCTGGATAC
rJMSF023E13+          GGAGGCTTCCTAACTTTTGCGGTTATAGCTGTTGTACTTGGTGCTGGAATAGCTGGATAC
                      ____________________________________________________________
consensus             GGAGGCTTCCTAACTTTTGCGGTTATAGCTGTTGTACTTGGTGCTGGAATAGCTGGATAC
 
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rJMSF044E09+          ATATTCTACAAATACAGACTTAGGTCATACATGGACACAGAGATTATGGCTATCATGTCG
rJMSF023E13+          ATATTCTACAAATACAGACTTAGGTCATACATGGACACAGAGATTATGGCTATCATGTCG
                      ____________________________________________________________
consensus             ATATTCTACAAATACAGACTTAGGTCATACATGGACACAGAGATTATGGCTATCATGTCG
 
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rJMSF044E09+          CAGTACATGCCTCTCGACAATAACCATCAGAATCAGGTTGTTCAACACGAAACTGAACCT
rJMSF023E13+          CAGTACATGCCTCTCGACAATAACCATCAGAATCAGGTTGTTCAACACGAAACTGAACCT
                      ____________________________________________________________
consensus             CAGTACATGCCTCTCGACAATAACCATCAGAATCAGGTTGTTCAACACGAAACTGAACCT
 
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rJMSF044E09+          TTACGAGACGCCTCATCTGTATGAAGAAGCGTCTTGGTTGATTTGTTGACTATACAGAAT
rJMSF023E13+          TTACGAGACGCCTCATCTGTATGAAGAAGCGTCTTGGTTGATTTGTTGACTATACAGAAT
                      ____________________________________________________________
consensus             TTACGAGACGCCTCATCTGTATGAAGAAGCGTCTTGGTTGATTTGTTGACTATACAGAAT
 
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rJMSF044E09+          GCATCAGTGATGCCGGTGAGACTCAACTTAACAGCTACACATTCGAGACAAGTCATATGG
rJMSF023E13+          GCATCAGTGATGCCGGTGAGACTCAACTTAACAGCTACACATTCGAGACAAGTCATATGG
                      ____________________________________________________________
consensus             GCATCAGTGATGCCGGTGAGACTCAACTTAACAGCTACACATTCGAGACAAGTCATATGG
 
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rJMSF044E09+          TACGGTGTTTTATAGTCTCTACATCTAAATTCTGTCTGGTTCCACTCAATTACTTGAGGA
rJMSF023E13+          TACGGTGTTTTATAGTCTCTACATCTAAATTCTGTCTGGTTCCACTCAATTACTTGAGGN
                      ____________________________________________________________
consensus             TACGGTGTTTTATAGTCTCTACATCTAAATTCTGTCTGGTTCCACTCAATTACTTGAGGA
 
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rJMSF044E09+          TATAGATTATATCAATAACCGAGCTCGCTGCGTTTGTGTATAAAATGGATCTA       
rJMSF023E13+          TATCGATNATATCAATAACCGAGCTCGCTGCGTTTGTGCATAAAATGGATCTACAGAGTA
                      ____________________________________________________________
consensus             TATCGATTATATCAATAACCGAGCTCGCTGCGTTTGTGTATAAAATGGATCTACAGAGTA