Contig 004265:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022A22Sequence552004265 (3)ref|XP_006348259.1|1e-30PREDICTED: serine/arginine repetitive matrix protein 2-like [Solanum tuberosum]742004265 (3)ref|XP_007149471.1|8e-64hypothetical protein PHAVU_005G073000g [Phaseolus vulgaris] gb|ESW21465.1| hypot
JMSF023A22Sequence438007465 (32)gb|EQY01644.1|2e-34inner membrane protein [Escherichia coli UMEA 3201-1]650004265 (3)emb|CDP05929.1|2e-63unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF022A22- GGAAGCC
                      ____________________________________________________________
consensus GGAAGCC
 
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JMSF022A22- TTTAATTTGTTTTGTTTTCCACTGATTGCATTTGCATCTCTCCCTCATTTCTTCGTCAAA
                      ____________________________________________________________
consensus TTTAATTTGTTTTGTTTTCCACTGATTGCATTTGCATCTCTCCCTCATTTCTTCGTCAAA
 
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JMSF022A22- ACCACTCACTCCACTAAATACGCAATCTCTTCTGCTTCAATGGAAATCACCTCAAGGCCG
                      ____________________________________________________________
consensus ACCACTCACTCCACTAAATACGCAATCTCTTCTGCTTCAATGGAAATCACCTCAAGGCCG
 
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JMSF022A22- CCCCGTCAAGAATCCGGCCTGGCCTCCTCCCAAAACGACGGCGGCATTAGCAGCACCACC
rJMSF022A22+ CGGCGGCATTAGCAGCACCACC
                      ____________________________________________________________
consensus CCCCGTCAAGAATCCGGCCTGGCCTCCTCCCAAAACGACGGCGGCATTAGCAGCACCACC
 
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JMSF022A22- GCCAA-TTGTTCATCTTCGCTGCCGCTTCATCATCAAATCCCAACCCCACCATTGACCCC
rJMSF022A22+ GCCAATTTGTTCATCTTCGCTGCCGCTTCATCATCAAATCCCAACCCCACCATTGACCCC
                      ____________________________________________________________
consensus GCCAATTTGTTCATCTTCGCTGCCGCTTCATCATCAAATCCCAACCCCACCATTGACCCC
 
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JMSF022A22- AAAGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
rJMSF023A22+ AGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
rJMSF022A22+ AAAGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
                      ____________________________________________________________
consensus AAAGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
 
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JMSF022A22- TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
rJMSF023A22+ TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
rJMSF022A22+ TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
                      ____________________________________________________________
consensus TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
 
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JMSF022A22- CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
rJMSF023A22+ CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
rJMSF022A22+ CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
                      ____________________________________________________________
consensus CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
 
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JMSF022A22- CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
rJMSF023A22+ CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
rJMSF022A22+ CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
                      ____________________________________________________________
consensus CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
 
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JMSF022A22- CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
rJMSF023A22+ CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
rJMSF022A22+ CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
                      ____________________________________________________________
consensus CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
 
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JMSF022A22- GCGGAA
rJMSF023A22+ GCGGAAACCGGAGATCTTGTCGCCCAGCATTCTTGATTTCCCGTCGCTCGCCCTCAGCCC
rJMSF022A22+ GCGGAAACCGGAGATCTTGTCGCCCAGCATTCTTGATTTCCCGTCGCTCGCCCTCAGCCC
                      ____________________________________________________________
consensus GCGGAAACCGGAGATCTTGTCGCCCAGCATTCTTGATTTCCCGTCGCTCGCCCTCAGCCC
 
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rJMSF023A22+ CGTCACGCCGTTGAACGAAGACCCGTTCCACAAATCCTCACCGTCCATCATGAGGAATTC
rJMSF022A22+ CGTCACGCCGTTGAACGAAGACCCGTTCCACAAATCCTCACCGTCCATCATGAGGAATTC
                      ____________________________________________________________
consensus CGTCACGCCGTTGAACGAAGACCCGTTCCACAAATCCTCACCGTCCATCATGAGGAATTC
 
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rJMSF023A22+ CTCCGAAGAAGAAGAGAAAGCCATCGCCGAGAAGAAATTCTACTTGCATCCATCTCCCAG
rJMSF022A22+ CTCCGAAGAAGAAGAGAAAGCCATCGCCGAGAAGAAATTCTACTTGCATCCATCTCCCAG
                      ____________________________________________________________
consensus CTCCGAAGAAGAAGAGAAAGCCATCGCCGAGAAGAAATTCTACTTGCATCCATCTCCCAG
 
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rJMSF023A22+ GGCATCTACTCCCAGAGACTCTGAGCCTCAGCTCTTGCCTCTCTTCCCGCTCACCTCGCC
rJMSF022A22+ GGCATCTACTCCCAGAGACTCTGAGCCTCAGCTCTTGCCTCTCTTCCCGCTCACCTCGCC
                      ____________________________________________________________
consensus GGCATCTACTCCCAGAGACTCTGAGCCTCAGCTCTTGCCTCTCTTCCCGCTCACCTCGCC
 
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rJMSF023A22+ GCGAGTTTCCAGTTCTTCTTCTTCAGGCCGGATTCTTACCTAATTACCATGTTGCCATCG
rJMSF022A22+ GCGAGTTTCCAGTTCTTCTTCTTCAGGCCGGATTCTTACCTAATTACCATGTTGCCATCG
                      ____________________________________________________________
consensus GCGAGTTTCCAGTTCTTCTTCTTCAGGCCGGATTCTTACCTAATTACCATGTTGCCATCG
 
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rJMSF023A22+ TCGTCTTAATTGGAACTCGATGTAACAGAGATCCTGTTTCAATTAATTGTAT
rJMSF022A22+ TCGTCTTAATTGGAACTCGATGTAACAGAGATCCTGTTTCAATTAATTGTATGTATAATT
                      ____________________________________________________________
consensus TCGTCTTAATTGGAACTCGATGTAACAGAGATCCTGTTTCAATTAATTGTATGTATAATT