Contig 004265:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022A22Sequence552004265 (3)ref|XP_006348259.1|1e-30PREDICTED: serine/arginine repetitive matrix protein 2-like [Solanum tuberosum]742004265 (3)ref|XP_007149471.1|8e-64hypothetical protein PHAVU_005G073000g [Phaseolus vulgaris] gb|ESW21465.1| hypot
JMSF023A22Sequence438007465 (32)gb|EQY01644.1|2e-34inner membrane protein [Escherichia coli UMEA 3201-1]650004265 (3)emb|CDP05929.1|2e-63unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF022A22-                                                                GGAAGCC
                      ____________________________________________________________
consensus                                                                  GGAAGCC
 
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JMSF022A22-           TTTAATTTGTTTTGTTTTCCACTGATTGCATTTGCATCTCTCCCTCATTTCTTCGTCAAA
                      ____________________________________________________________
consensus             TTTAATTTGTTTTGTTTTCCACTGATTGCATTTGCATCTCTCCCTCATTTCTTCGTCAAA
 
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JMSF022A22-           ACCACTCACTCCACTAAATACGCAATCTCTTCTGCTTCAATGGAAATCACCTCAAGGCCG
                      ____________________________________________________________
consensus             ACCACTCACTCCACTAAATACGCAATCTCTTCTGCTTCAATGGAAATCACCTCAAGGCCG
 
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JMSF022A22-           CCCCGTCAAGAATCCGGCCTGGCCTCCTCCCAAAACGACGGCGGCATTAGCAGCACCACC
rJMSF022A22+                                                CGGCGGCATTAGCAGCACCACC
                      ____________________________________________________________
consensus             CCCCGTCAAGAATCCGGCCTGGCCTCCTCCCAAAACGACGGCGGCATTAGCAGCACCACC
 
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JMSF022A22-           GCCAA-TTGTTCATCTTCGCTGCCGCTTCATCATCAAATCCCAACCCCACCATTGACCCC
rJMSF022A22+          GCCAATTTGTTCATCTTCGCTGCCGCTTCATCATCAAATCCCAACCCCACCATTGACCCC
                      ____________________________________________________________
consensus             GCCAATTTGTTCATCTTCGCTGCCGCTTCATCATCAAATCCCAACCCCACCATTGACCCC
 
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JMSF022A22-           AAAGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
rJMSF023A22+            AGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
rJMSF022A22+          AAAGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
                      ____________________________________________________________
consensus             AAAGCCCATTTCGAGATCTGATGCTAGCCCCTACCCGACAACCTTTGTTCAAGCGGACAC
 
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JMSF022A22-           TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
rJMSF023A22+          TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
rJMSF022A22+          TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
                      ____________________________________________________________
consensus             TTCTACCTTCAAGCAGGTTGTCCAGAGGCTCACCGGCTCATCGGAGACTGCTAAAAACGC
 
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JMSF022A22-           CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
rJMSF023A22+          CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
rJMSF022A22+          CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
                      ____________________________________________________________
consensus             CTCCAAACCCGGTCTTTCAGATCCGCCGCCGCCACCGCCCAACAACAAGGGCTTCTGCAG
 
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JMSF022A22-           CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
rJMSF023A22+          CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
rJMSF022A22+          CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
                      ____________________________________________________________
consensus             CATACCTCCCAAGAAACAAGGCTTCAAGGCTCTTTACGAGAGGAGGAACAGCCTCAAGAA
 
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JMSF022A22-           CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
rJMSF023A22+          CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
rJMSF022A22+          CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
                      ____________________________________________________________
consensus             CGGGCTCATGATCAGCCCTTTGATCCCCGCCGGCCTCATCACCAATTCCGGGTACTCGCC
 
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JMSF022A22-           GCGGAA                                                      
rJMSF023A22+          GCGGAAACCGGAGATCTTGTCGCCCAGCATTCTTGATTTCCCGTCGCTCGCCCTCAGCCC
rJMSF022A22+          GCGGAAACCGGAGATCTTGTCGCCCAGCATTCTTGATTTCCCGTCGCTCGCCCTCAGCCC
                      ____________________________________________________________
consensus             GCGGAAACCGGAGATCTTGTCGCCCAGCATTCTTGATTTCCCGTCGCTCGCCCTCAGCCC
 
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rJMSF023A22+          CGTCACGCCGTTGAACGAAGACCCGTTCCACAAATCCTCACCGTCCATCATGAGGAATTC
rJMSF022A22+          CGTCACGCCGTTGAACGAAGACCCGTTCCACAAATCCTCACCGTCCATCATGAGGAATTC
                      ____________________________________________________________
consensus             CGTCACGCCGTTGAACGAAGACCCGTTCCACAAATCCTCACCGTCCATCATGAGGAATTC
 
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rJMSF023A22+          CTCCGAAGAAGAAGAGAAAGCCATCGCCGAGAAGAAATTCTACTTGCATCCATCTCCCAG
rJMSF022A22+          CTCCGAAGAAGAAGAGAAAGCCATCGCCGAGAAGAAATTCTACTTGCATCCATCTCCCAG
                      ____________________________________________________________
consensus             CTCCGAAGAAGAAGAGAAAGCCATCGCCGAGAAGAAATTCTACTTGCATCCATCTCCCAG
 
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rJMSF023A22+          GGCATCTACTCCCAGAGACTCTGAGCCTCAGCTCTTGCCTCTCTTCCCGCTCACCTCGCC
rJMSF022A22+          GGCATCTACTCCCAGAGACTCTGAGCCTCAGCTCTTGCCTCTCTTCCCGCTCACCTCGCC
                      ____________________________________________________________
consensus             GGCATCTACTCCCAGAGACTCTGAGCCTCAGCTCTTGCCTCTCTTCCCGCTCACCTCGCC
 
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rJMSF023A22+          GCGAGTTTCCAGTTCTTCTTCTTCAGGCCGGATTCTTACCTAATTACCATGTTGCCATCG
rJMSF022A22+          GCGAGTTTCCAGTTCTTCTTCTTCAGGCCGGATTCTTACCTAATTACCATGTTGCCATCG
                      ____________________________________________________________
consensus             GCGAGTTTCCAGTTCTTCTTCTTCAGGCCGGATTCTTACCTAATTACCATGTTGCCATCG
 
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rJMSF023A22+          TCGTCTTAATTGGAACTCGATGTAACAGAGATCCTGTTTCAATTAATTGTAT        
rJMSF022A22+          TCGTCTTAATTGGAACTCGATGTAACAGAGATCCTGTTTCAATTAATTGTATGTATAATT
                      ____________________________________________________________
consensus             TCGTCTTAATTGGAACTCGATGTAACAGAGATCCTGTTTCAATTAATTGTATGTATAATT