Contig 004261:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF011L15+                       TTTGANTGGCTCAAGGTATGCTGTTCAGAGAAGTGGGAACATATTAA
                      ____________________________________________________________
consensus                          TTTGANTGGCTCAAGGTATGCTGTTCAGAGAAGTGGGAACATATTAA
 
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rJMSF011L15+          TGTCATTTAACCATAAGGAAGCTAGCGTTGCAATTCCATTGTTCTCACCCGTCCTTGTCC
rJMSF021B22+                                                         CCCGTCCNTGTCC
                      ____________________________________________________________
consensus             TGTCATTTAACCATAAGGAAGCTAGCGTTGCAATTCCATTGTTCTCACCCGTCCTTGTCC
 
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rJMSF011L15+          CGATGGCTCAAAGCATTGGACCATTTC-TTTCACAGATTGCAACTTCACCAACAGTTCGT
rJMSF021B22+          CGATGGCTCAAAGCATTGGACCANTTCTTTTCACAGATTGCAACTTCACCAACAGTTCGT
                      ____________________________________________________________
consensus             CGATGGCTCAAAGCATTGGACCATTTCTTTTCACAGATTGCAACTTCACCAACAGTTCGT
 
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rJMSF011L15+          CTTGGGGCAGAGATGACTCTGAAGCAGCTAGGGACTCTTAGCCCTCCCATTATGAAGCAA
rJMSF021B22+          CTTGGGGCAGAGATGACTCTGAAGCAGCTAGGGACTCTTAGCCCTCCCATTATGAAGCAA
                      ____________________________________________________________
consensus             CTTGGGGCAGAGATGACTCTGAAGCAGCTAGGGACTCTTAGCCCTCCCATTATGAAGCAA
 
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rJMSF011L15+          GTACTTCCGCTGGTTGAGCAACTTCCTCCTCTGTACATGGACTTAATTAATGGAAGAGAA
rJMSF021B22+          GTACTTCCGCTGGTTGAGCAACTTCCTCCTCTGTACATGGACTTAATTAATGGAAGAGAA
                      ____________________________________________________________
consensus             GTACTTCCGCTGGTTGAGCAACTTCCTCCTCTGTACATGGACTTAATTAATGGAAGAGAA
 
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rJMSF011L15+          AATTTTGTTCCAAGACCCGAAGAAACAAGAAGACTGATAAAGTCTTACTATGGCATTTCA
rJMSF021B22+          AATTTTGTTCCAAGACCCGAAGAAACAAGAAGACTGATAAAGTCTTACTATGGCATTTCA
                      ____________________________________________________________
consensus             AATTTTGTTCCAAGACCCGAAGAAACAAGAAGACTGATAAAGTCTTACTATGGCATTTCA
 
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rJMSF011L15+          AGGAATCTTTTGATAAAGTTCAAAGATGATACAATTGATGAAACTTCTGTACTAGCTCAA
rJMSF021B22+          AGGAATCTTTTGATAAAGTTCAAAGATGATACAATTGATGAAACTTCTGTACTAGCTCAA
                      ____________________________________________________________
consensus             AGGAATCTTTTGATAAAGTTCAAAGATGATACAATTGATGAAACTTCTGTACTAGCTCAA
 
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rJMSF011L15+          TTGCTTAGTACAGATTCTGCTATCAGTTCAATGCTGGATATGTCTATTCGATCTCTACCA
rJMSF021B22+          TTGCTTAGTACAGATTCTGCTATCAGTTCAATGCTGGATATGTCTATTCGATCTCTACCA
                      ____________________________________________________________
consensus             TTGCTTAGTACAGATTCTGCTATCAGTTCAATGCTGGATATGTCTATTCGATCTCTACCA
 
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rJMSF011L15+          GGAGACCATGGGCTTCCTTTACACCAGGCTCTCCCAGATGTACCCCCTGCAATGACAGAT
rJMSF021B22+          GGAGACCATGGGCTTCCTTTACACCAGGCTCTCCCAGATGTACCCCCTGCAATGACAGAT
                      ____________________________________________________________
consensus             GGAGACCATGGGCTTCCTTTACACCAGGCTCTCCCAGATGTACCCCCTGCAATGACAGAT
 
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rJMSF011L15+          GCTGTTAACAAGAGCGGAGAGCTTTTGGCAAATTTGGCTGCTGGAACGCCATGGGAAACC
rJMSF021B22+          GCTGTTAACAAGAGCGGAGAGCTTTTGGCAAATTTGGCTGCTGGAACGCCATGGGAAACC
                      ____________________________________________________________
consensus             GCTGTTAACAAGAGCGGAGAGCTTTTGGCAAATTTGGCTGCTGGAACGCCATGGGAAACC
 
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rJMSF011L15+          TTTGCTAAAGAAGTAGGCAATACTTTTGGTGTAGAATCGAATATCCTTCGTGCTGAGGTT
rJMSF021B22+          TTTGCTAAAGAAGTAGGCAATACTTTTGGTGTAGAATCGAATATCCTTCGTGCTGAGGTT
                      ____________________________________________________________
consensus             TTTGCTAAAGAAGTAGGCAATACTTTTGGTGTAGAATCGAATATCCTTCGTGCTGAGGTT
 
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rJMSF011L15+          TCAAAAGAGCTAGACCTGCTTGTAGATGTAACAACATCTTGGATGGTTTCAAATTCTGGA
rJMSF021B22+          TCAAAAGAGCTAGACCTGCTTGTAGATGTAACAACATCTTGGATGGTTTCAAATTCTGGA
                      ____________________________________________________________
consensus             TCAAAAGAGCTAGACCTGCTTGTAGATGTAACAACATCTTGGATGGTTTCAAATTCTGGA
 
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rJMSF011L15+          CCGAGACTTTTACGCAGCTGAATTCGTTATTTATAGATGT-AAAAAAAATGCAATTGGTT
rJMSF021B22+          CCGAGACTTTTACGCAGCTGAATTCGTTATTTATAGATGTAAAAAAAAATGCAATTGGTT
                      ____________________________________________________________
consensus             CCGAGACTTTTACGCAGCTGAATTCGTTATTTATAGATGTAAAAAAAAATGCAATTGGTT
 
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rJMSF011L15+          AATGTCAATGCCATACGTGTAGTTGTATAGTTTCAAGTACCATGGGAAGCTC        
rJMSF021B22+          AATGTCAATGCCATACGTGTAGTTGTATAGTTTCAAGTACCATGGGAAGCTCGGTGAAAT
                      ____________________________________________________________
consensus             AATGTCAATGCCATACGTGTAGTTGTATAGTTTCAAGTACCATGGGAAGCTCGGTGAAAT