Contig 004254:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS123H07Sequence571004254 (3)gb|KDO50371.1|1e-91hypothetical protein CISIN_1g020011mg [Citrus sinensis]
JMSF019K18Sequence541005056 (2)ref|XP_006368293.1|1e-14dehydration-responsive family protein [Populus trichocarpa] gb|ERP64862.1| dehyd750004254 (3)ref|XP_011092623.1|6e-85PREDICTED: probable methyltransferase PMT20 [Sesamum indicum] ref|XP_011092624.1
JMSF048A01Sequence686005056 (2)ref|XP_006368294.1|2e-59hypothetical protein POPTR_0001s01380g [Populus trichocarpa] gb|ERP64863.1| hypo773004254 (3)ref|XP_011092623.1|2e-98PREDICTED: probable methyltransferase PMT20 [Sesamum indicum] ref|XP_011092624.1

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS123H07- GGCTTTTGGGTCC
                      ____________________________________________________________
consensus GGCTTTTGGGTCC
 
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JMFS123H07- TCTCTGGTCCTCCAGTGAACTACGAGAATCGCTGGAGAGGATGGAACACCACTATCGAAG
                      ____________________________________________________________
consensus TCTCTGGTCCTCCAGTGAACTACGAGAATCGCTGGAGAGGATGGAACACCACTATCGAAG
 
. : . : . : . : . : . :
JMFS123H07- AGCAGAAATCAGATTACGAGAAGCTGCAAGACTTGCTTACTTCGATTTGTTTCAAACTTT
                      ____________________________________________________________
consensus AGCAGAAATCAGATTACGAGAAGCTGCAAGACTTGCTTACTTCGATTTGTTTCAAACTTT
 
. : . : . : . : . : . :
JMFS123H07- ATGACAAAAAGGGCGACATTGCCGTTTGGCAAAAGTTATCGGACAATAGTTGCTATAAGC
                      ____________________________________________________________
consensus ATGACAAAAAGGGCGACATTGCCGTTTGGCAAAAGTTATCGGACAATAGTTGCTATAAGC
 
. : . : . : . : . : . :
JMFS123H07- AGCTCGATAGCCCTGGTAGCTACCCGCCAAAATGCGATGATAGCATGGAACCGGATTCCG
                      ____________________________________________________________
consensus AGCTCGATAGCCCTGGTAGCTACCCGCCAAAATGCGATGATAGCATGGAACCGGATTCCG
 
. : . : . : . : . : . :
JMFS123H07- CGTGGTACACGCCACTTCGGACTTGTGTTGTGGTACCAAACCCGAACTCGAGGAAAGTAT
                      ____________________________________________________________
consensus CGTGGTACACGCCACTTCGGACTTGTGTTGTGGTACCAAACCCGAACTCGAGGAAAGTAT
 
. : . : . : . : . : . :
JMFS123H07- CGTTAGAGTCGTTGCCAAAGTGGCCAGGAAGGTTGCACACTGCTCCAGAACGAGTTATGG
                      ____________________________________________________________
consensus CGTTAGAGTCGTTGCCAAAGTGGCCAGGAAGGTTGCACACTGCTCCAGAACGAGTTATGG
 
. : . : . : . : . : . :
JMFS123H07- ATGTTCGTGGAGGGAGCGAGGGGACCTTTAGACACGACGATAGTAAATGGAAAATGCGAG
rJMSF048A01+ TTAGACACGACGATAGTAAATGGAAAATGCGAG
                      ____________________________________________________________
consensus ATGTTCGTGGAGGGAGCGAGGGGACCTTTAGACACGACGATAGTAAATGGAAAATGCGAG
 
. : . : . : . : . : . :
JMFS123H07- TGAAGCACTACATGACGCTGCTACCCGGGCTCGGGAGTGATGAGATAAGAAATGTGATGG
rJMSF048A01+ TGAAGCACTACATGACGCTGCTACCCGGGCTCGGGAGTGATGAGATAAGAAATGTGATGG
rJMSF019K18+ TCGGGAGTGATGAGATAAGAAATGTGATGG
                      ____________________________________________________________
consensus TGAAGCACTACATGACGCTGCTACCCGGGCTCGGGAGTGATGAGATAAGAAATGTGATGG
 
. : . : . : . : . : . :
JMFS123H07- AC--GAACACATTATTCGGGGGGTTTGCCGCTTCTCTGGTGGATGAGCCTCTGTGGGTTA
rJMSF048A01+ ACATGAACACATTATTCGGGGGGTTTGCCGCTTCTCTGGTGGATGAGCCTCTGTGGGTTA
rJMSF019K18+ ACATGAACACNTTATTCGGGGGGTTTGCCGCTTCTCTGGTGGATGAGCCTCTGTGGGTTA
                      ____________________________________________________________
consensus ACATGAACACATTATTCGGGGGGTTTGCCGCTTCTCTGGTGGATGAGCCTCTGTGGGTTA
 
. : . : . : . : . : . :
JMFS123H07- TGAACGTCGTTTCTTCCTAT
rJMSF048A01+ TGAACGTCGTTTCTTCCTATTCGTTAAATACACTTCCTGTGATATACGACAGGGGTCTCA
rJMSF019K18+ TGAACGTCGTTTCTTCCTATTCGTTAAATACACTTCCTGTGATATACGACAGGGGTCTCA
                      ____________________________________________________________
consensus TGAACGTCGTTTCTTCCTATTCGTTAAATACACTTCCTGTGATATACGACAGGGGTCTCA
 
. : . : . : . : . : . :
rJMSF048A01+ TTGGTATCTACCATGACTGGTGCGAGGCGTTTTCAACATATCCTAGAACATACGATCTAC
rJMSF019K18+ TTGGTATCTACCATGACTGGTGCGAGGCGTTTTCAACATATCCTAGAACATACGATCTAC
                      ____________________________________________________________
consensus TTGGTATCTACCATGACTGGTGCGAGGCGTTTTCAACATATCCTAGAACATACGATCTAC
 
. : . : . : . : . : . :
rJMSF048A01+ TTCATGCCGATGGCCTTTTCACTGCTGAAAGCCATAGATGTGAAATGAAGTACGTTCTTT
rJMSF019K18+ TTCATGCCGATGGCCTTTTCACTGCTGAAAGCCATAGATGTGAAATGAAGTACGTTCTTT
                      ____________________________________________________________
consensus TTCATGCCGATGGCCTTTTCACTGCTGAAAGCCATAGATGTGAAATGAAGTACGTTCTTT
 
. : . : . : . : . : . :
rJMSF048A01+ TAGAAATGGATCGGATCTTGAGGCCAAAGGGGTACGCCTTAATCCGTGAGGCAAGGCAAT
rJMSF019K18+ TAGAAATGGATCGGATCTTGAGGCCAAAGGGGTACGCCTTAATCCGTGAGGCAAGGCAAT
                      ____________________________________________________________
consensus TAGAAATGGATCGGATCTTGAGGCCAAAGGGGTACGCCTTAATCCGTGAGGCAAGGCAAT
 
. : . : . : . : . : . :
rJMSF048A01+ TTGTGGACACTATTGCGGCCATAGCTAAGAAGATGAGATGGGCGTGTCATACAGAAGACA
rJMSF019K18+ TTGTGGACACTATTGCGGCCATAGCTAAGAAGATGAGATGGGCGTGTCATACAGAAGACA
                      ____________________________________________________________
consensus TTGTGGACACTATTGCGGCCATAGCTAAGAAGATGAGATGGGCGTGTCATACAGAAGACA
 
. : . : . : . : . : . :
rJMSF048A01+ CAGAAGATGGCGTAAGAACCGAGAAGGTGTTGATCTGTCAAAAGGACCTCTGGCATTCTT
rJMSF019K18+ CAGAAGATGGCGTAAGAACCGAGAAGGTGTTGATCTGTCAAAAGGACCTCTGGCATTCTT
                      ____________________________________________________________
consensus CAGAAGATGGCGTAAGAACCGAGAAGGTGTTGATCTGTCAAAAGGACCTCTGGCATTCTT
 
. : . : . : . : . : . :
rJMSF048A01+ CTAAGCAGAGTTCAATATGAAAGAAAAGAAACCAGAAGTTTTGTGAAGAGTAAGTTGTGC
rJMSF019K18+ CTAAGCAGAGTTCAATATGAAAGAAAAGAAACCAGAAGTTTTGTGAAGAGTAAGTTGTGC
                      ____________________________________________________________
consensus CTAAGCAGAGTTCAATATGAAAGAAAAGAAACCAGAAGTTTTGTGAAGAGTAAGTTGTGC
 
. : . : . : . : . : . :
rJMSF048A01+ ACTTGCTCACACAGAAACCATTTTTTGTTCTTAAGATAGCAGAAAAGAGAATTTTCAATA
rJMSF019K18+ ACTTGCTCACACAGAAACCATTTTTTGTTCTTAAGATAGCAGAAAAGAGAATTTTCAATA
                      ____________________________________________________________
consensus ACTTGCTCACACAGAAACCATTTTTTGTTCTTAAGATAGCAGAAAAGAGAATTTTCAATA
 
. : . : . : . : . : . :
rJMSF048A01+ AGGAATCCATTTTTCTGCTCTCTTTTTCTCTTTAGAGCCAGCAAATGCAATGGTGTGTAA
rJMSF019K18+ AGGAATCCATTTTTCTGCTCTCTTTTTCTCTTTAGAGCCAGCAAATGCAATGGTGTGTAA
                      ____________________________________________________________
consensus AGGAATCCATTTTTCTGCTCTCTTTTTCTCTTTAGAGCCAGCAAATGCAATGGTGTGTAA
 
. : . : . : . : . : . :
rJMSF048A01+ TCTGTTTTTGAACCATTGCATACCTTATTTATGTAAGAAGTTCATTTTTTAAGTATTAAT
rJMSF019K18+ TCTGTTTTTGAACCATTGCATACCTTATTTATGTAAGAAGTTCATTTTTTAAGTATTAAT
                      ____________________________________________________________
consensus TCTGTTTTTGAACCATTGCATACCTTATTTATGTAAGAAGTTCATTTTTTAAGTATTAAT
 
. : . : . : . : . : . :
rJMSF048A01+ GAAAA
rJMSF019K18+ GAAAATTGGAAACTCCAATGTGTACTCTTGCTCGAGTCCTATTGGAGGAAGAATCTCATG
                      ____________________________________________________________
consensus GAAAATTGGAAACTCCAATGTGTACTCTTGCTCGAGTCCTATTGGAGGAAGAATCTCATG