Contig 004253:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019H11Sequence516013332 (2)ref|XP_009771280.1|7e-68PREDICTED: glucan endo-1,3-beta-glucosidase 2-like [Nicotiana sylvestris]731004253 (2)ref|XP_009771279.1|1e-70PREDICTED: glucan endo-1,3-beta-glucosidase 12-like, partial [Nicotiana sylvest
JMSF047O06Sequence684002446 (5)ref|XP_009628415.1|4e-103PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Nicotiana tomentosiformis]741004253 (2)ref|XP_008379673.1|6e-115PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Malus domestica]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+                       TTAAAGTACGATGACATCAAAATGGTGGTGACTGAAACCGGCTGGCC
                      ____________________________________________________________
consensus                          TTAAAGTACGATGACATCAAAATGGTGGTGACTGAAACCGGCTGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          GTCCAAAGGCGACTCCAAAGAAGTCGGCGCCGGCGTAGAGAACGCCGCCGCGTACAACGG
                      ____________________________________________________________
consensus             GTCCAAAGGCGACTCCAAAGAAGTCGGCGCCGGCGTAGAGAACGCCGCCGCGTACAACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          CAACCTGGTGCGCCGAGTGCTCACCGGCGGCGGGACCCCCTTAAGACCTCACGAAGAACT
                      ____________________________________________________________
consensus             CAACCTGGTGCGCCGAGTGCTCACCGGCGGCGGGACCCCCTTAAGACCTCACGAAGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          CACCGTATACCTCTTCGCCCTCTTCAACGAGAACAAGAAGATCGGGCCGTCGTCGGAGAG
                      ____________________________________________________________
consensus             CACCGTATACCTCTTCGCCCTCTTCAACGAGAACAAGAAGATCGGGCCGTCGTCGGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          AAACTTCGGACTGTTCTACCCGAACGGGAAAAAAGTCTACGACATACCGTTCACAACGCA
                      ____________________________________________________________
consensus             AAACTTCGGACTGTTCTACCCGAACGGGAAAAAAGTCTACGACATACCGTTCACAACGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          AGGGCTAAAGGGGTACCACGACAGGCGGTCTCCGGCCGTCGGCGGCCACATTCTCTCCAA
                      ____________________________________________________________
consensus             AGGGCTAAAGGGGTACCACGACAGGCGGTCTCCGGCCGTCGGCGGCCACATTCTCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          ATCGGCTCGGGGAAAGACATGGTGCGTGGCAAACGGGAAAGCCGGGAAAGAAAAACTTCA
rJMSF019H11+                        AGACGTGGTGCGTGGCGAACGGGGAAGCGGGAAAAGAAAGGCTGCA
                      ____________________________________________________________
consensus             ATCGGCTCGGGGAAAGACGTGGTGCGTGGCGAACGGGGAAGCGGGGAAAGAAAGGCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          GGCCGGTCTAGACTTCGCTTGCGGAGAAGGTGGAGTTGATTGCCGTTCGATCCAACCGGG
rJMSF019H11+          GGCGGGTCTAGACTACGCTTGCGGTGAGGGCGGGGCGGACTGCCGTTCGATCCAGCCGGG
                      ____________________________________________________________
consensus             GGCGGGTCTAGACTTCGCTTGCGGTGAGGGTGGGGTTGATTGCCGTTCGATCCAGCCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          TTCCACGTGTTACAATCCTAACACTCTTGAGGCCCACGCTTCGTTCGCGTTCAACAGTTA
rJMSF019H11+          ATCCACGTGCTACAATCCTAACACTCTAGAGGCGCACGCTTCGTTCGCTTTCAACAGTTA
                      ____________________________________________________________
consensus             TTCCACGTGTTACAATCCTAACACTCTTGAGGCGCACGCTTCGTTCGCTTTCAACAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047O06+          TTATCAGAAGAAGGG                                             
rJMSF019H11+          CTATCAGAGGAAGGGGCGTGCCGGCGGCACGTGCTACTTCGGCGGGGCCGCCTACGTTGT
                      ____________________________________________________________
consensus             TTATCAGAGGAAGGGGCGTGCCGGCGGCACGTGCTACTTCGGCGGGGCCGCCTACGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019H11+          CATGCAACAACCTAAATTTGGGAACTGTGAATTACCCACTGAAGATTGAACACCCCCATA
                      ____________________________________________________________
consensus             CATGCAACAACCTAAATTTGGGAACTGTGAATTACCCACTGAAGATTGAACACCCCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019H11+          GGCCATAGCAGACTTTGATGACCAAAAAGTCCAAAACTTTATTGGATTTTGAATGAAGTG
                      ____________________________________________________________
consensus             GGCCATAGCAGACTTTGATGACCAAAAAGTCCAAAACTTTATTGGATTTTGAATGAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019H11+          TAGTGCATAGATGCTACTACTAGAGTGTCTATGGAAATTACTGCGCTTATCTATCCAGGA
                      ____________________________________________________________
consensus             TAGTGCATAGATGCTACTACTAGAGTGTCTATGGAAATTACTGCGCTTATCTATCCAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019H11+          ATCACCATAGTTACTGTTGGGTTTAGTGAATTCATTTTTGTGATTGTGGGGGGGAAAACT
                      ____________________________________________________________
consensus             ATCACCATAGTTACTGTTGGGTTTAGTGAATTCATTTTTGTGATTGTGGGGGGGAAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019H11+          AATGTAATGTGTATTAAGTTGTTACATAGTACTCTGTAATTTCTTTTCCCTTTTCATTGT
                      ____________________________________________________________
consensus             AATGTAATGTGTATTAAGTTGTTACATAGTACTCTGTAATTTCTTTTCCCTTTTCATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019H11+          CTACTGCTAGTACTACTTACAGCTTATAATGTTGATTAATCTCTGTAGTGCATTCAGTTG
                      ____________________________________________________________
consensus             CTACTGCTAGTACTACTTACAGCTTATAATGTTGATTAATCTCTGTAGTGCATTCAGTTG