Contig 004250:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019C03Sequence301013465 (2)gb|AFH68055.1|3e-44seven transmembrane calmodulin binding protein [Capsicum annuum]746004250 (2)gb|AFH68055.1|7e-84seven transmembrane calmodulin binding protein [Capsicum annuum]
JMSF036G18Sequence648013465 (2)ref|XP_009782287.1|5e-87PREDICTED: MLO-like protein 2 isoform X2 [Nicotiana sylvestris]660004250 (2)gb|AFH68055.1|2e-65seven transmembrane calmodulin binding protein [Capsicum annuum]

Alignment

This contig is upended


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rJMSF019C03+                                            GGAGAATTCAAGAAAGGGGAGATGTA
                      ____________________________________________________________
consensus                                               GGAGAATTCAAGAAAGGGGAGATGTA
 
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rJMSF019C03+          TTGAAGGGAGCACCAGTGGTTGAGCCTGGAGATAATCTTTTCTGGTTCAATCGCCCTTCT
                      ____________________________________________________________
consensus             TTGAAGGGAGCACCAGTGGTTGAGCCTGGAGATAATCTTTTCTGGTTCAATCGCCCTTCT
 
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rJMSF036G18+          TTAATGCTCTTCTTCATTCGTTTTGNTCTCTTTCAGAATGCATTCCAAGTTGCTTTCTTT
rJMSF019C03+          TTAATGCTCTTCTTCATTCGTTTTGTTCTCTTTCAGAATGCATTCCAAGTTGCTTTCTTT
                      ____________________________________________________________
consensus             TTAATGCTCTTCTTCATTCGTTTTGTTCTCTTTCAGAATGCATTCCAAGTTGCTTTCTTT
 
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rJMSF036G18+          TTCTGGAGCTGGGTTAAGTTTGGTTTATTTTCTTGCTTCCACAGGAATGCTGCAGACATA
rJMSF019C03+          TTCTGGAGCTGGGTTAAGTTTGGTTTATTTTCTTGCTTCCACAGGAATGCTGCAGACATA
                      ____________________________________________________________
consensus             TTCTGGAGCTGGGTTAAGTTTGGTTTATTTTCTTGCTTCCACAGGAATGCTGCAGACATA
 
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rJMSF036G18+          GCTATCAGGCTGTCAATGGGGGTGATAATACAAATTCTGTGCAGCTATGTCACACTCCCT
rJMSF019C03+          GCTATCAGGCTGTCAATGGGGGTGATAATACAAATTCTGTGCAGCTATGTCACACTCCCT
                      ____________________________________________________________
consensus             GCTATCAGGCTGTCAATGGGGGTGATAATACAAATTCTGTGCAGCTATGTCACACTCCCT
 
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rJMSF036G18+          CTCTATGCCTTAGTTACACAGATGGGGTCAAGCATGAAACCGGTGATCTTCGGCGACAAC
rJMSF019C03+          CTCTATGCCTTAGTTACACAGATGGGGTCAAGCATGAAACCGGTGATCTTCGGCGACAAC
                      ____________________________________________________________
consensus             CTCTATGCCTTAGTTACACAGATGGGGTCAAGCATGAAACCGGTGATCTTCGGCGACAAC
 
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rJMSF036G18+          GTAGCATCGGCAATAAAGACGTGGCACCGTGCAGCCAGGCAGCGGGCGAGGCGCGGGCAG
rJMSF019C03+          GTAGCATCGGCAATAAAGACGTGGCACCGTGCAGCCAGGCAGCGGGCGAGGCGCGGGCAG
                      ____________________________________________________________
consensus             GTAGCATCGGCAATAAAGACGTGGCACCGTGCAGCCAGGCAGCGGGCGAGGCGCGGGCAG
 
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rJMSF036G18+          CGATCAGAAAACTCCACCCCGTTTACAAGCAGGCCGGCGACGCCACTGCACGGGATGTCC
rJMSF019C03+          CGATCAGAAAACTCCACCCCGTTTACAAGCAGGCCGGCGACGCCACTGCACGGGATGTCC
                      ____________________________________________________________
consensus             CGATCAGAAAACTCCACCCCGTTTACAAGCAGGCCGGCGACGCCACTGCACGGGATGTCC
 
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rJMSF036G18+          CCTGTTCACTTGCTAAGCGACTTCCAACATAACGCCGCCGATAGCCTCCAAGCGTCTCCC
rJMSF019C03+          CCTGTTCACTTGCTAAGCGACTTCCAACATAACGCCGCCGATAGCCTCCAAGCGTCTCCC
                      ____________________________________________________________
consensus             CCTGTTCACTTGCTAAGCGACTTCCAACATAACGCCGCCGATAGCCTCCAAGCGTCTCCC
 
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rJMSF036G18+          CGGGGACCTGCCTCTGACGACCAAGTCTGGGCCAATTCCGCCGCCGCCACTTCCGCTTCT
rJMSF019C03+          CGGGGACCTGCCTCTGACGACCAAGTCTGGGCCAATTCCGCCGCCGCCACTTCCGCTTCT
                      ____________________________________________________________
consensus             CGGGGACCTGCCTCTGACGACCAAGTCTGGGCCAATTCCGCCGCCGCCACTTCCGCTTCT
 
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rJMSF036G18+          CCCCGGAGAAACTTAAGCTCTAACGACGACCAACATGAAATTCAGATTGTGTCCAATGAT
rJMSF019C03+          CCCCGGAGAAACTTAAGCTCTAACGACGACCAACATGAAATTCAGATTGTGTCCAATGAT
                      ____________________________________________________________
consensus             CCCCGGAGAAACTTAAGCTCTAACGACGACCAACATGAAATTCAGATTGTGTCCAATGAT
 
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rJMSF036G18+          TTCTCTTTTGTCAACAACAAACACAACTAGAAGTAGGTTGATATATAATCAACTTCTTGC
rJMSF019C03+          TTCTCTTTTGTCAACAACAAACACAACTAGAAGTAGGTTGATATATAATCAACTTCTTGC
                      ____________________________________________________________
consensus             TTCTCTTTTGTCAACAACAAACACAACTAGAAGTAGGTTGATATATAATCAACTTCTTGC
 
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rJMSF036G18+          ACTGTATGTATGTGTGTATCTAATATCTATACTGGGCGTATGTAGGGGTGGCCCCAAATA
rJMSF019C03+          ACTGTATGTATGTGTGTATCTAATATCTATACTGGGCGTATGTAGGGGTGGCCCCAAATA
                      ____________________________________________________________
consensus             ACTGTATGTATGTGTGTATCTAATATCTATACTGGGCGTATGTAGGGGTGGCCCCAAATA