Contig 004248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048L17Sequence427020651ref|XP_008780353.1|66.6PREDICTED: uncharacterized protein LOC103700169 [Phoenix dactylifera]110004248 (2)gb|ABO15685.1|5e-09NBS-NBS-LRR type disease resistance protein [Ipomoea batatas]
JMSF018H15Sequence740004248 (2)gb|ABO15685.1|2e-75NBS-NBS-LRR type disease resistance protein [Ipomoea batatas]

Alignment

This contig is upended


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rJMSF018H15-                                                  ATATATACGTATATACAGGG
                      ____________________________________________________________
consensus                                                     ATATATACGTATATACAGGG
 
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rJMSF018H15-          TACATTTACACATACTACACTCCCTGGCCATCAAGAAACTGCATTTTCTCATCATTTACA
                      ____________________________________________________________
consensus             TACATTTACACATACTACACTCCCTGGCCATCAAGAAACTGCATTTTCTCATCATTTACA
 
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rJMSF018H15-          ATTTTATGTTAATAATTTCAATGTGAGGAATATGAGATATTTTTGTGTAGTTTTCACCAT
                      ____________________________________________________________
consensus             ATTTTATGTTAATAATTTCAATGTGAGGAATATGAGATATTTTTGTGTAGTTTTCACCAT
 
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rJMSF018H15-          TTGGTTCTAGAGNAAGCATCAATTTATCGTTTAAAGAAGTGAATTGAATTGAGTTGAGTT
                      ____________________________________________________________
consensus             TTGGTTCTAGAGNAAGCATCAATTTATCGTTTAAAGAAGTGAATTGAATTGAGTTGAGTT
 
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rJMSF018H15-          TAGACAAATGTTGAATACCCAAAGGTACCTGTTCAAGCAACTTGCAATTAACCAAGCCGA
                      ____________________________________________________________
consensus             TAGACAAATGTTGAATACCCAAAGGTACCTGTTCAAGCAACTTGCAATTAACCAAGCCGA
 
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rJMSF018H15-          GCTCTTCAAGAAGGGGTATTGCACCTTCCTCCACCATTATCCATTTCAGTGCCGTGAAGG
                      ____________________________________________________________
consensus             GCTCTTCAAGAAGGGGTATTGCACCTTCCTCCACCATTATCCATTTCAGTGCCGTGAAGG
 
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rJMSF018H15-          AATTAATATTCAAAAACTTGAGCTTTGGGAACTTTCCAGCCTTGAAACACAACCCTTCAC
                      ____________________________________________________________
consensus             AATTAATATTCAAAAACTTGAGCTTTGGGAACTTTCCAGCCTTGAAACACAACCCTTCAC
 
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rJMSF018H15-          CTTCATAAGACTCAATAAGTAGAAGATGTGCTAACATGGGTAGATCTTGGAGAAGCAGTA
                      ____________________________________________________________
consensus             CTTCATAAGACTCAATAAGTAGAAGATGTGCTAACATGGGTAGATCTTGGAGAAGCAGTA
 
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rJMFF048L17+                                                               AGTGAAG
rJMSF018H15-          GTGGATCTTCAAGAACACAACTATTCCTCANCTCTAGTTTAGTTAGACTTACAAGTGAAG
                      ____________________________________________________________
consensus             GTGGATCTTCAAGAACACAACTATTCCTCANCTCTAGTTTAGTTAGACTTACAAGTGAAG
 
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rJMFF048L17+          ATAACCATTGAGGGATCCTCTCTAGACGCCCTTTTAATTTTAATGTACGAAGAAAAAGAG
rJMSF018H15-          ATAACCATTGAGGGATACTCTCTAGACGCCCATCCAATTTCAATGTACGAAGACNATGAG
                      ____________________________________________________________
consensus             ATAACCATTGAGGGATCCTCTCTAGACGCCCTTTTAATTTTAATGTACGAAGACAATGAG
 
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rJMFF048L17+          GAATGGTAGATAAAGAATGTTGGATATCAAGGAT                          
rJMSF018H15-          GAATTGTAGATGAAGAATGTTGGATATCAAGGATATCCTTTCCATCTGCCACAAGCTTTA
                      ____________________________________________________________
consensus             GAATTGTAGATGAAGAATGTTGGATATCAAGGATATCCTTTCCATCTGCCACAAGCTTTA
 
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rJMSF018H15-          AAGAGATNAGGTTTGTCAACTTTTCAATGGATGAACATAATTCTTTTCCATCTTCTTGTC
                      ____________________________________________________________
consensus             AAGAGATNAGGTTTGTCAACTTTTCAATGGATGAACATAATTCTTTTCCATCTTCTTGTC
 
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rJMSF018H15-          TCAAATCTACGACTCCAAGCTTTCTCAGNTGTGCTAGATTCCCTATCTCAGACACCACTT
                      ____________________________________________________________
consensus             TCAAATCTACGACTCCAAGCTTTCTCAGNTGTGCTAGATTCCCTATCTCAGACACCACTT