Contig 004246:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF020G07+                                                         TTGGAATACGATG
                      ____________________________________________________________
consensus                                                            TTGGAATACGATG
 
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rJMSF020G07+          CCCGGGGGGGCCATCGTGCCTACAACCATGTCGC-GGGGAATTCCAGCAGTTTCAAGTTC
rJMSF018C24+                    CCATCGTGCCTACAACCATGTCGCGGGGGAATTCCAGCAGTTTCAAGTTC
                      ____________________________________________________________
consensus             CCCGGGGGGGCCATCGTGCCTACAACCATGTCGCGGGGGAATTCCAGCAGTTTCAAGTTC
 
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rJMSF020G07+          TACTGCAGCGGTTCGTCGAGGATGAGCCTTATCAGGGGCATAGGCTTCAGTACTATGCTA
rJMSF018C24+          TACTGCAGCGGTTCGTCGAGGATGAGCCTTATCAGGGGCATAGGCTTCAGTACTATGCTA
                      ____________________________________________________________
consensus             TACTGCAGCGGTTCGTCGAGGATGAGCCTTATCAGGGGCATAGGCTTCAGTACTATGCTA
 
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rJMSF020G07+          AAAACCGATGCATTCTTCGCAGCTTTCTCCAGGTTCCTGCTCTTAAAGATGATTGTTCTA
rJMSF018C24+          AAAACCGATGCATTCTTCGCAGCTTTCTCCAGGTTCCTGCTCTTAAAGATGATTGTTCTA
                      ____________________________________________________________
consensus             AAAACCGATGCATTCTTCGCAGCTTTCTCCAGGTTCCTGCTCTTAAAGATGATTGTTCTA
 
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rJMSF020G07+          AGGAAAAGAAGGTGGTGGGATTTGAAGAAGGAACAGATAGCATTTCACTTGTGAAGTTGT
rJMSF018C24+          AGGAAAAGAAGGTGGTGGGATTTGAAGAAGGAACAGATAGCATTTCACTTGTGAAGTTGT
                      ____________________________________________________________
consensus             AGGAAAAGAAGGTGGTGGGATTTGAAGAAGGAACAGATAGCATTTCACTTGTGAAGTTGT
 
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rJMSF020G07+          CTGAAATCATTAAGAAAACAATGCATACATTCTGGGAATTTCTCCATGCTGATAAGGATG
rJMSF018C24+          CTGAAATCATTAAGAAAACAATGCATACATTCTGGGAATTTCTCCATGCTGATAAGGATG
                      ____________________________________________________________
consensus             CTGAAATCATTAAGAAAACAATGCATACATTCTGGGAATTTCTCCATGCTGATAAGGATG
 
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rJMSF020G07+          AAGCTGGTTTGTCTGTAAAGGTTCATAGTTCTCATGTTGATCCTGCAGATTCTGAGCTTC
rJMSF018C24+          AAGCTGGTTTGTCTGTAAAGGTTCATAGTTCTCATGTTGATCCTGCAGATTCTGAGCTTC
                      ____________________________________________________________
consensus             AAGCTGGTTTGTCTGTAAAGGTTCATAGTTCTCATGTTGATCCTGCAGATTCTGAGCTTC
 
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rJMSF020G07+          TTTTGGATGTCACAACAACTCATCAAAAGAAGGAGAGGAAACTGAAGGAAATACAGAGGA
rJMSF018C24+          TTTTGGATGTCACAACAACTCATCAAAAGAAGGAGAGGAAACTGAAGGAAATACAGAGGA
                      ____________________________________________________________
consensus             TTTTGGATGTCACAACAACTCATCAAAAGAAGGAGAGGAAACTGAAGGAAATACAGAGGA
 
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rJMSF020G07+          GTGGGAACTGCATAGTGAAGAAGTTCCAAAAACAGCAAGAAGGAAGAGTGAATGAAACCC
rJMSF018C24+          GTGGGAACTGCATAGTGAAGAAGTTCCAAAAACAGCAAGAAGGAAGAGTGAATGAAACCC
                      ____________________________________________________________
consensus             GTGGGAACTGCATAGTGAAGAAGTTCCAAAAACAGCAAGAAGGAAGAGTGAATGAAACCC
 
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rJMSF020G07+          AGGCGGTGTTCATTTCTCGAGTGGAACTCAGACTGGTGGCCAAAGTCCTAGGTTTGCCCA
rJMSF018C24+          AGGCGGTGTTCATTTCTCGAGTGGAACTCAGACTGGTGGCCAAAGTCCTAGGTTTGCCCA
                      ____________________________________________________________
consensus             AGGCGGTGTTCATTTCTCGAGTGGAACTCAGACTGGTGGCCAAAGTCCTAGGTTTGCCCA
 
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rJMSF020G07+          GGTTAACCAGAGACCACTTAGTATGGTGTAAAAAGAAGCTAAACAACATTAATATAGTTG
rJMSF018C24+          GGTTAACCAGAGACCACTTAGTATGGTGTAAAAAGAAGCTAAACAACATTAATATAGTTG
                      ____________________________________________________________
consensus             GGTTAACCAGAGACCACTTAGTATGGTGTAAAAAGAAGCTAAACAACATTAATATAGTTG
 
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rJMSF020G07+          GTAGAAAGGTTAGTGTAGAGCCCTCTTGCTTGCTTTTCCCCAGTTAGAACTTAGAAGCTC
rJMSF018C24+          GTAGAAAGGTTAGTGTAGAGCCCTCTTGCTTGCTTTTCCCCAGTTAGAACTTAGAAGCTC
                      ____________________________________________________________
consensus             GTAGAAAGGTTAGTGTAGAGCCCTCTTGCTTGCTTTTCCCCAGTTAGAACTTAGAAGCTC
 
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rJMSF020G07+          CACTTTTGAGGTGCTTTTTTTCTTGCTCTGTATACAGAACTGATAAATACTCAAAACATC
rJMSF018C24+          CACTTTTGAGGTGCTTTTTTTCTTGCTCTGTATACAGAACTGATAAATACTCAAAACATC
                      ____________________________________________________________
consensus             CACTTTTGAGGTGCTTTTTTTCTTGCTCTGTATACAGAACTGATAAATACTCAAAACATC
 
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rJMSF020G07+          AAAACTAGAAACATGTCAACAGATAGTGAACTTCCCAAAAGTTTAAGGATGCAAT     
rJMSF018C24+          AAAACTAGAAACATGTCAACAGATAGTGAACTTCCCAAAAGTTTAAGGATGCAATAAAGC
                      ____________________________________________________________
consensus             AAAACTAGAAACATGTCAACAGATAGTGAACTTCCCAAAAGTTTAAGGATGCAATAAAGC