Contig 004244:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017K16Sequence510004244 (2)gb|KDP35911.1|2e-39hypothetical protein JCGZ_09883 [Jatropha curcas]718004244 (2)ref|XP_010322648.1|1e-108PREDICTED: LOW QUALITY PROTEIN: ABC transporter I family member 17-like [Solanu

Alignment

This contig is upended


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JMSF017K16-                               GAGATTGATGGAAAGCTGAGCCAAATCTCGAATAATGCCT
                      ____________________________________________________________
consensus                                 GAGATTGATGGAAAGCTGAGCCAAATCTCGAATAATGCCT
 
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JMSF017K16-           CTGCTGGAAAACTGTTCATCTGGGGAAGGCGCCTTCTTCCTCCATAACAACTGCCCACCA
                      ____________________________________________________________
consensus             CTGCTGGAAAACTGTTCATCTGGGGAAGGCGCCTTCTTCCTCCATAACAACTGCCCACCA
 
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JMSF017K16-           CCACGCCTTGTTCTCCCTCGCGTGGCTCAACTCATCATTCCATGGAGAATTTCCAAGGCA
                      ____________________________________________________________
consensus             CCACGCCTTGTTCTCCCTCGCGTGGCTCAACTCATCATTCCATGGAGAATTTCCAAGGCA
 
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JMSF017K16-           GTTTAACGGAGCATCTGGTTGTGGTGGATGGTGGTAGCGAAATCAAAATCCGGGTTAGTG
                      ____________________________________________________________
consensus             GTTTAACGGAGCATCTGGTTGTGGTGGATGGTGGTAGCGAAATCAAAATCCGGGTTAGTG
 
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JMSF017K16-           GGCTCACGAAGGATTCAAACAATGGCGTCACCGTACTCAACAAGGTCAGCCTGGATATAC
                      ____________________________________________________________
consensus             GGCTCACGAAGGATTCAAACAATGGCGTCACCGTACTCAACAAGGTCAGCCTGGATATAC
 
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JMSF017K16-           CCAGAGGTGTAATCGTGGGGATTATTGGGCCGAGTGGTAGCGGAAAATCAACTTTCTTGA
                      ____________________________________________________________
consensus             CCAGAGGTGTAATCGTGGGGATTATTGGGCCGAGTGGTAGCGGAAAATCAACTTTCTTGA
 
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JMSF017K16-           GAGCTCTCAACCGCCTATGGGAGCCTCCTTCTGGCACAATCTTCTTGGATGGTAAAGATA
rJMSF017K16+            GCTCTCAACCGCCTATGGGAGCCTCCTTCTGGCACAATCTTCTTGGATGGTAAAGATA
                      ____________________________________________________________
consensus             GAGCTCTCAACCGCCTATGGGAGCCTCCTTCTGGCACAATCTTCTTGGATGGTAAAGATA
 
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JMSF017K16-           TATGTGAGTTGGATGTGCTGAGCCTTCGCCGCCATGTTGGGATGTTGTTTCAGCTCCCTG
rJMSF017K16+          TATGTGAGTTGGATGTGCTGAGCCTTCGCCGCCATGTTGGGATGTTGTTTCAGCTCCCTG
                      ____________________________________________________________
consensus             TATGTGAGTTGGATGTGCTGAGCCTTCGCCGCCATGTTGGGATGTTGTTTCAGCTCCCTG
 
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JMSF017K16-           CTCTTTTTCANGGCAGTGTTGCAGATAACATCAGATATGGACCACAGTTA          
rJMSF017K16+          CTCTTTTTCAAGGCAGTGTTGCAGATAACATCAGATATGGACCACAGTTAAGAGGGAAAA
                      ____________________________________________________________
consensus             CTCTTTTTCAAGGCAGTGTTGCAGATAACATCAGATATGGACCACAGTTAAGAGGGAAAA
 
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rJMSF017K16+          AACTTGGTGACAATCATGTCCACAAATTGCTTACCCTTGCTGATCTCGACTCCTCTTTCT
                      ____________________________________________________________
consensus             AACTTGGTGACAATCATGTCCACAAATTGCTTACCCTTGCTGATCTCGACTCCTCTTTCT
 
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rJMSF017K16+          TCAACAAATGTGCTGCTGAGTTATCTGTTGGTCAGGCTCAAAGGGTTGCACTTGCTAGGA
                      ____________________________________________________________
consensus             TCAACAAATGTGCTGCTGAGTTATCTGTTGGTCAGGCTCAAAGGGTTGCACTTGCTAGGA
 
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rJMSF017K16+          CCTTGGCTAATGAACCACAGGTTCTGTTACTAGATGAGCCAACCAGTGCACTGGATCCCA
                      ____________________________________________________________
consensus             CCTTGGCTAATGAACCACAGGTTCTGTTACTAGATGAGCCAACCAGTGCACTGGATCCCA
 
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rJMSF017K16+          TATCAACACAGAATATCGAGGATGTGCTTGTAAAGCTGAAGAAAGATCACAACATGACAA
                      ____________________________________________________________
consensus             TATCAACACAGAATATCGAGGATGTGCTTGTAAAGCTGAAGAAAGATCACAACATGACAA
 
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rJMSF017K16+          TTGCAATCGTCTCTCACAGTATCAAACAAATACAGAGAATTGCTGATATGGTTTGCCTTC
                      ____________________________________________________________
consensus             TTGCAATCGTCTCTCACAGTATCAAACAAATACAGAGAATTGCTGATATGGTTTGCCTTC
 
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rJMSF017K16+          TTGTTGGCGGTGAAATCGTTGAAATTCTAAAACCCGATCAACTCTCTGAAGCTAAGCATC
                      ____________________________________________________________
consensus             TTGTTGGCGGTGAAATCGTTGAAATTCTAAAACCCGATCAACTCTCTGAAGCTAAGCATC
 
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rJMSF017K16+          CCATGGCACAAAGGTTTCTCCAACTTAGCTCCTAGTTTGTGTTACTGTTATCAGCTCACT
                      ____________________________________________________________
consensus             CCATGGCACAAAGGTTTCTCCAACTTAGCTCCTAGTTTGTGTTACTGTTATCAGCTCACT
 
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rJMSF017K16+          ATTTTATGCCCGGGTTTGATAGAATGATAGGTACGAGTTTGCCATGTGACTATAAGTGGA
                      ____________________________________________________________
consensus             ATTTTATGCCCGGGTTTGATAGAATGATAGGTACGAGTTTGCCATGTGACTATAAGTGGA
 
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rJMSF017K16+          ACTATTTCTGGTCTCACATTAGTTGAGAGTAGAGAATATCTCATCTTTCAAATGCTGTTG
                      ____________________________________________________________
consensus             ACTATTTCTGGTCTCACATTAGTTGAGAGTAGAGAATATCTCATCTTTCAAATGCTGTTG