Contig 004243:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF017F15+                                                              GGGGGATA
                      ____________________________________________________________
consensus                                                                 GGGGGATA
 
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rJMFF017F15+          ACTCACTTCCACGCATCATCAGTTTTGGTAATGCCTATGGTGTCATCCAAAATGAATGGC
                      ____________________________________________________________
consensus             ACTCACTTCCACGCATCATCAGTTTTGGTAATGCCTATGGTGTCATCCAAAATGAATGGC
 
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rJMFF017F15+          TTCCGGGGAAGTGGGCTTGNCCGGGCCAAATTATTTTCTGTTAGAGGCCAAGGTTGGAGC
rJMSF017J05+                                            TTTCTGTTAGAGGCCAAGGTTGGAGC
                      ____________________________________________________________
consensus             TTCCGGGGAAGTGGGCTTGNCCGGGCCAAATTATTTTCTGTTAGAGGCCAAGGTTGGAGC
 
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rJMFF017F15+          AAAATTTCTGGTGATGATGAGGATGGTGAGAGAATTTTGGAGGCAACTGCAATGCTTCCC
rJMSF017J05+          AAAATTTCTGGTGATGATGAGGATGGTGAGAGAATTTTGGAGGCAACTGCAATGCTTCCC
                      ____________________________________________________________
consensus             AAAATTTCTGGTGATGATGAGGATGGTGAGAGAATTTTGGAGGCAACTGCAATGCTTCCC
 
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rJMFF017F15+          CAGAGTGTTGGGGGTAGCAGTAGTATGGTTACATGATGATAGCTTAAGCAAAGTACGGAC
rJMSF017J05+          CAGAGTGTTGGGGGTAGCAGTAGTATGGTTACATGATGATAGCTTAAGCAAAGTA-AGAC
                      ____________________________________________________________
consensus             CAGAGTGTTGGGGGTAGCAGTAGTATGGTTACATGATGATAGCTTAAGCAAAGTACGGAC
 
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rJMFF017F15+          CAATACCGGTTATTTCTACCATACCATCGTTTTGCCAAGATTTTTAGACACTGTTATTAA
rJMSF017J05+          CAATACCGGTTATTTCTACCATACCATCGTTTTGCCAAGATTTTTAGACACTGTTATTAA
                      ____________________________________________________________
consensus             CAATACCGGTTATTTCTACCATACCATCGTTTTGCCAAGATTTTTAGACACTGTTATTAA
 
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rJMFF017F15+          TGTCTGTCTATAGTTGTGCCTGCAAGACTGCTAAGGGATTGATTATGTTAGTTCCCAGAA
rJMSF017J05+          TGTCTGTCTATAGTTGTGCCTGCAAGACTGCTAAGGGATTGATTATGTTAGTTCCCAGAA
                      ____________________________________________________________
consensus             TGTCTGTCTATAGTTGTGCCTGCAAGACTGCTAAGGGATTGATTATGTTAGTTCCCAGAA
 
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rJMFF017F15+          TATGACAAATGAAGGGATATATATATATAGTGTTGGTGGAGTTGAATTTGAGAAAGTTTC
rJMSF017J05+          TATGACAAATGAAGGGATATATATATATAGTGTTGGTGGAGTTGAATTTGAGAAAGTTTC
                      ____________________________________________________________
consensus             TATGACAAATGAAGGGATATATATATATAGTGTTGGTGGAGTTGAATTTGAGAAAGTTTC
 
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rJMFF017F15+          CATTGGTAATTTGAGTTCAGGAATTGGTTGCGAAATTATGGCAATCTATGTTGGAATCGG
rJMSF017J05+          CATTGGTAATTTGAGTTCAGGAATTGGTTGTGAAATTATGGCAATCTATGTTGGAATCGG
                      ____________________________________________________________
consensus             CATTGGTAATTTGAGTTCAGGAATTGGTTGTGAAATTATGGCAATCTATGTTGGAATCGG
 
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rJMFF017F15+          AAGATGGTGAGGCGAAGAGGCATGAGGAGGTGGGTAGTTTGGCGCGCCACGAGCTGCAAG
rJMSF017J05+          AAGATGGTGAGGCGAAGAGGCATGAGGAGGTGGGTAGTTTGGCGCGCCACGAGCTGCAAG
                      ____________________________________________________________
consensus             AAGATGGTGAGGCGAAGAGGCATGAGGAGGTGGGTAGTTTGGCGCGCCACGAGCTGCAAG
 
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rJMFF017F15+          CAATTGTTTGAAACGAGAGGTTAGTACAGTAGTATGTATCAGTGTAGTACAAATTCTGCA
rJMSF017J05+          CAATTGTTTGAAACGAGAGGTTAGTACAGTAGTATGTATCAGTGTAGTACAAATTCTGCA
                      ____________________________________________________________
consensus             CAATTGTTTGAAACGAGAGGTTAGTACAGTAGTATGTATCAGTGTAGTACAAATTCTGCA
 
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rJMFF017F15+          AATGACTGTGATATGTGTATAAGCTGCTATGGTATGGTCCCTGTGTGTAGTGAGTGAGTA
rJMSF017J05+          AATGACTGTGATATGTGTATAAGCTGCTATGGTATGGTCCCTGTGTGTAGTGAGTGAGTA
                      ____________________________________________________________
consensus             AATGACTGTGATATGTGTATAAGCTGCTATGGTATGGTCCCTGTGTGTAGTGAGTGAGTA
 
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rJMFF017F15+          GTGAGCCTAAGGTTATCCCTTTGTATCTTCTTCTATAGACTGTAGACTATAGTGGGTAAA
rJMSF017J05+          GTGAGCCTAAGGTTATCCCTTTGTATCTTCTTCTATAGACTGTAGACTATAGTGGGTAAA
                      ____________________________________________________________
consensus             GTGAGCCTAAGGTTATCCCTTTGTATCTTCTTCTATAGACTGTAGACTATAGTGGGTAAA
 
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rJMFF017F15+          TCTCAGAACACCCAAAGAAAACTTGTTCAGAATTTACACTTGTAATACCAAATCCCCCT 
rJMSF017J05+          TCTCAGAACACCCAAAGAAAACTTGTTCAGAATTTACACTTGTAATACCAAATCCCCCTT
                      ____________________________________________________________
consensus             TCTCAGAACACCCAAAGAAAACTTGTTCAGAATTTACACTTGTAATACCAAATCCCCCTT
 
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rJMSF017J05+          GAATCATAAGGAGGGGGAGTTCCCAATTGGACTTCCATTACATACAACATTTTAGGCCTT
                      ____________________________________________________________
consensus             GAATCATAAGGAGGGGGAGTTCCCAATTGGACTTCCATTACATACAACATTTTAGGCCTT