Contig 004242:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007G17Sequence637005041 (3)emb|CDP03086.1|3e-04unnamed protein product [Coffea canephora]726004242 (3)ref|XP_009614403.1|130PREDICTED: uncharacterized protein LOC104107339 [Nicotiana tomentosiformis]
JMSF017I04Sequence163005041 (3)737004242 (3)ref|XP_009614403.1|130PREDICTED: uncharacterized protein LOC104107339 [Nicotiana tomentosiformis]
JMSF018P18Sequence251005041 (3)727004242 (3)ref|XP_009614403.1|162PREDICTED: uncharacterized protein LOC104107339 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF018P18+                           GCCCAGGAACTTAATAAGTGGACTTGCTGAAGATGCTTTGACA
                      ____________________________________________________________
consensus                              GCCCAGGAACTTAATAAGTGGACTTGCTGAAGATGCTTTGACA
 
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rJMSF018P18+          TGCCTTCAATGCATCGGCGACACCCAATTTCTGCTCTCTCCCGCTGCAAGAGAGATTGTA
rJMFF007G17+                                                     CTGCAAGAGAGATTGTA
rJMSF017I04+                                                     CTGCAAGAGAGATTGTA
                      ____________________________________________________________
consensus             TGCCTTCAATGCATCGGCGACACCCAATTTCTGCTCTCTCCCGCTGCAAGAGAGATTGTA
 
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rJMSF018P18+          CTTACTCAACGTGTGTTGGGAAAAGGGTTGTCCCTGCAGTACATCCATGAAAACCGGGAG
rJMFF007G17+          CTTACTCAACGTGTGTTGGGAAAAGGGTTGTCCCTGCAGTACATCCATGAAAACCGGGAG
rJMSF017I04+          CTTACTCAACGTGTGTTGGGAAAAGGGTTGTCCCTGCAGTACATCCATGAAAACCGGGAG
                      ____________________________________________________________
consensus             CTTACTCAACGTGTGTTGGGAAAAGGGTTGTCCCTGCAGTACATCCATGAAAACCGGGAG
 
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rJMSF018P18+          CAAGCAATGTGTGGGGTCGGGAAGATCTTCAAAGAAATATATGCCAAGGTGTTGACAGAT
rJMFF007G17+          CAAGCAATGTGTGGGGTCGGGAAGATCTTCAAAGAAATATATGCCAAGGTGTTGACAGAT
rJMSF017I04+          CAAGCAATGTGTGGGGTCGGGAAGATCTTCAAAGAAATATATGCCAAGGTGTTGACAGAT
                      ____________________________________________________________
consensus             CAAGCAATGTGTGGGGTCGGGAAGATCTTCAAAGAAATATATGCCAAGGTGTTGACAGAT
 
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rJMSF018P18+          ATGATGGCGATGCCGCCACCTAACAGAAACAGTGAGCAGCAAAGGCAAAACGAGATGGTG
rJMFF007G17+          ATGATGGCGATGCCGCCACCTAACAGAAACAGTGAGCAGCAAAGGCAAAACGAGATGGTG
rJMSF017I04+          ATGATGGCGATGCCGCCACCTAACAGAAACAGTGAGCAGCAAAGGCAAAACGAGATGGTG
                      ____________________________________________________________
consensus             ATGATGGCGATGCCGCCACCTAACAGAAACAGTGAGCAGCAAAGGCAAAACGAGATGGTG
 
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rJMSF018P18+          GATCAATTTGGACAATTGGGAGGGCAGTCATCTGTGGCGAGACCTCAACGCAACGAGGTA
rJMFF007G17+          GATCAATTTGGACAATTGGGAGGGCAGTCATCTGTGGCGAGACCTCAACGCAACGAGGTA
rJMSF017I04+          GATCAATTTGGACAATTGGGAGGGCAGTCATCTGTGGCGAGACCTCAACGCAACGAGGTA
                      ____________________________________________________________
consensus             GATCAATTTGGACAATTGGGAGGGCAGTCATCTGTGGCGAGACCTCAACGCAACGAGGTA
 
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rJMSF018P18+          CCATTTGAGGACAGGATGAGGACGATGTGTGTTGCGTTTTCCAGTGGGTTTCCTGTTTCT
rJMFF007G17+          CCATTTGAGGACAGGATGAGGACGATGTGTGTTGCGTTTTCCAGTGGGTTTCCTGTTTCT
rJMSF017I04+          CCATTTGAGGACAGGATGAGGACGATGTGTGTTGCGTTTTCCAGTGGGTTTCCTGTTTCT
                      ____________________________________________________________
consensus             CCATTTGAGGACAGGATGAGGACGATGTGTGTTGCGTTTTCCAGTGGGTTTCCTGTTTCT
 
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rJMSF018P18+          GAATGGGAAATAAGTGAGTTCATCACTGGGGCGTTTGGGAACTGCATTGAGTCCATCCAA
rJMFF007G17+          GAATGGGAAATAAGTGAGTTCATCACTGGGGCGTTTGGGAACTGCATTGAGTCCATCCAA
rJMSF017I04+          GAATGGGAAATAAGTGAGTTCATCACTGGGGCGTTTGGGAACTGCATTGAGTCCATCCAA
                      ____________________________________________________________
consensus             GAATGGGAAATAAGTGAGTTCATCACTGGGGCGTTTGGGAACTGCATTGAGTCCATCCAA
 
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rJMSF018P18+          ATGCAGCAGCCCCTATATGCACATGCCCATGTAGTGTTCTTCTCTCCTGCAACCATCAAC
rJMFF007G17+          ATGCAGCAGCCCCTATATGCACATGCCCATGTAGTGTTCTTCTCTCCTGCAACCATCAAC
rJMSF017I04+          ATGCAGCAGCCCCTATATGCACATGCCCATGTAGTGTTCTTCTCTCCTGCAACCATCAAC
                      ____________________________________________________________
consensus             ATGCAGCAGCCCCTATATGCACATGCCCATGTAGTGTTCTTCTCTCCTGCAACCATCAAC
 
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rJMSF018P18+          TCCATTCTTCAAGGCGCACAGGTTGCAAAGTTCACTGTTAATGGGAAGGACATGTGGATG
rJMFF007G17+          TCCATTCTTCAAGGCGCACAGGTTGCAAAGTTCACTGTTAATGGGAAGGACATGTGGATG
rJMSF017I04+          TCCATTCTTCAAGGCGCACAGGTTGCAAAGTTCACTGTTAATGGGAAGGACATGTGGATG
                      ____________________________________________________________
consensus             TCCATTCTTCAAGGCGCACAGGTTGCAAAGTTCACTGTTAATGGGAAGGACATGTGGATG
 
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rJMSF018P18+          AGCAAATACCAACACCCACCATCCTGATTCCTCACAAACATATTGTTCTTTCCAGTTTCC
rJMFF007G17+          AGCAAATACCAACACCCACCATCCTGATTCCTCACAAACATATTGTTCTTTCCAGTTTCC
rJMSF017I04+          AGCAAATACCAACACCCACCATCCTGATTCCTCACAAACATATTGTTCTTTCCAGTTTCC
                      ____________________________________________________________
consensus             AGCAAATACCAACACCCACCATCCTGATTCCTCACAAACATATTGTTCTTTCCAGTTTCC
 
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rJMSF018P18+          TAGTCTTATTGTGTGTTGTAGGGCAAATTATGGTGCGGACCATAAAAAAAATACATTTTT
rJMFF007G17+          TAGTCTTATTGTGTGTTGTAGGGCAAATTATGGTGCGGACCATAAAAAAAATACATTTTT
rJMSF017I04+          TAGTCTTATTGTGTGTTGTAGGGCAAATTATGGTGCGGACCATAAAAAAAATACATTTTT
                      ____________________________________________________________
consensus             TAGTCTTATTGTGTGTTGTAGGGCAAATTATGGTGCGGACCATAAAAAAAATACATTTTT
 
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rJMSF018P18+          AATATACTAAAAATACATTATTCG                                    
rJMFF007G17+          AATATACTAAAAATACATTATTCGTCTACTGAATATACATTATACAAAATAATGTACTTT
rJMSF017I04+          AATATACTAAAAATACATTATTCGTCTACTGAATATACATTATACAAAATAATGTACTTT
                      ____________________________________________________________
consensus             AATATACTAAAAATACATTATTCGTCTACTGAATATACATTATACAAAATAATGTACTTT
 
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rJMFF007G17+          CAGTACTCAAATAATGTA                                          
rJMSF017I04+          CAGTACTCAAATAATGTACATTTCTTGAATACCAAATGTACATTTTTAATGTACCATATC
                      ____________________________________________________________
consensus             CAGTACTCAAATAATGTACATTTCTTGAATACCAAATGTACATTTTTAATGTACCATATC