Contig 004241:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017H03Sequence262002348 (2)dbj|BAK02564.1|2e-13predicted protein [Hordeum vulgare subsp. vulgare]735004241 (2)ref|XP_009626784.1|2e-106PREDICTED: probable protein phosphatase 2C 60 [Nicotiana tomentosiformis]
JMSF034O21Sequence613002348 (2)gb|KJB67988.1|7e-63hypothetical protein B456_010G222200 [Gossypium raimondii]701004241 (2)ref|XP_008461186.1|8e-102PREDICTED: probable protein phosphatase 2C 60 [Cucumis melo] ref|XP_008461187.1|

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017H03+                                                       AAGGAGGAAGGTCTC
                      ____________________________________________________________
consensus                                                          AAGGAGGAAGGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+                              TTCAGGTTGCACCGCCTGCGTTGCCATCATTCGAAACAAT
rJMSF017H03+          TCTGATTACAATGGGCCAACTTCAGGTTGCACCGCCTGCGTTGCCATCATTCGAAACAAT
                      ____________________________________________________________
consensus             TCTGATTACAATGGGCCAACTTCAGGTTGCACCGCCTGCGTTGCCATCATTCGAAACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          CAACTTATTGTTGCAAATGCAGGTGACTCTCGTTGTGTTCTATCCAGGAAGGGTCAGGCA
rJMSF017H03+          CAACTTATTGTTGCAAATGCAGGTGACTCTCGTTGTGTTCTATCCAGGAAGGGTCAGGCA
                      ____________________________________________________________
consensus             CAACTTATTGTTGCAAATGCAGGTGACTCTCGTTGTGTTCTATCCAGGAAGGGTCAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          CATGATTTGTCAAGAGATCACAAGCCTGACCTTGAAGTTGAAAAGGACAGGATACTGAAA
rJMSF017H03+          CATGATTTGTCAAGAGATCACAAGCCTGACCTTGAAGTTGAAAAGGACAGGATACTGAAA
                      ____________________________________________________________
consensus             CATGATTTGTCAAGAGATCACAAGCCTGACCTTGAAGTTGAAAAGGACAGGATACTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          GCTGGTGGTTATGTTCAGTGTGGACGGATCAACGGGAGTTTGAATTTGGCAAGAGCAATA
rJMSF017H03+          GCTGGTGGTTATGTTCAGTGTGGACGGATCAACGGGAGTTTGAATTTGGCAAGAGCAATA
                      ____________________________________________________________
consensus             GCTGGTGGTTATGTTCAGTGTGGACGGATCAACGGGAGTTTGAATTTGGCAAGAGCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          GGGGACATGGAACTGAAACAGAACAAAACCTTGCCTGCAGAAAAACAGATAGTGACTGCT
rJMSF017H03+          GGGGACATGGAACTGAAACAGAACAAAACCTTGCCTGCAGAAAAACAGATAGTGACTGCT
                      ____________________________________________________________
consensus             GGGGACATGGAACTGAAACAGAACAAAACCTTGCCTGCAGAAAAACAGATAGTGACTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          AATCCTGACATTAAAACTGTCGAGCTTTGTGCTGATGATGATTTCCTTGTTGTAGCATGC
rJMSF017H03+          AATCCTGACATTAAAACTGTCGAGCTTTGTGCTGATGATGATTTCCTTGTTGTAGCATGC
                      ____________________________________________________________
consensus             AATCCTGACATTAAAACTGTCGAGCTTTGTGCTGATGATGATTTCCTTGTTGTAGCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          GATGGGATATGGGATTGCATGACAAGCCAGCAACTTGTGGACTTCGTCAAGGACAAATTA
rJMSF017H03+          GATGGGATATGGGATTGCATGACAAGCCAGCAACTTGTGGACTTCGTCAAGGACAAATTA
                      ____________________________________________________________
consensus             GATGGGATATGGGATTGCATGACAAGCCAGCAACTTGTGGACTTCGTCAAGGACAAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          AACAACGAAAACAAGCTTTCGGCGGTATGCCAAGAGGTTCTTGATAGGTGTTTGGCGCCA
rJMSF017H03+          AACAACGAAAACAAGCTTTCGGCGGTATGCCAAGAGGTTCTTGATAGGTGTTTGGCGCCA
                      ____________________________________________________________
consensus             AACAACGAAAACAAGCTTTCGGCGGTATGCCAAGAGGTTCTTGATAGGTGTTTGGCGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          TCATCTGGCGGAGAAGGATGTGACAACATGACGATGATTTTGGTTCAGTTCAAGAAAAAT
rJMSF017H03+          TCATCTGGCGGAGAAGGATGTGACAACATGACGATGATTTTGGTTCAGTTCAAGAAAAAT
                      ____________________________________________________________
consensus             TCATCTGGCGGAGAAGGATGTGACAACATGACGATGATTTTGGTTCAGTTCAAGAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          CTGAACACCAAGGAACAACCTACCGCCTCTAATAAGCAATCTGAATCTAGCCTTGGTGCA
rJMSF017H03+          CTGAACACCAAGGAACAACCTACCGCCTCTAATAAGCAATCTGAATCTAGCCTTGGTGCA
                      ____________________________________________________________
consensus             CTGAACACCAAGGAACAACCTACCGCCTCTAATAAGCAATCTGAATCTAGCCTTGGTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          GCAGGAGAATCTGGTTCTAAGTAATGCCAAAACTTTTAGCTTTACATATTTGTGATTTTA
rJMSF017H03+          GCAGGAGAATCTGGTTCTAAGTAATGCCAAAACTTTTAGCTTTACATATTTGTGATTTTA
                      ____________________________________________________________
consensus             GCAGGAGAATCTGGTTCTAAGTAATGCCAAAACTTTTAGCTTTACATATTTGTGATTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O21+          CTTGTGGAAGAACTCAATGGTTAAAAGAAATTGACGA-TTGAAAATTTTCTGTAAAGTTT
rJMSF017H03+          CTTGTGGAAGAACTCAATGGTTAAAAGAAATTGACGATTTGAAAATTTTCTGTAAAGTTT
                      ____________________________________________________________
consensus             CTTGTGGAAGAACTCAATGGTTAAAAGAAATTGACGATTTGAAAATTTTCTGTAAAGTTT