Contig 004240:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF017E18+                                                               ATCAAAG
                      ____________________________________________________________
consensus                                                                  ATCAAAG
 
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rJMSF017E18+          ACGACTACCCGCAGCACAATTCTATTAAAAATCGGGCGCTTGAGACGGGAGCTTCTTGTG
                      ____________________________________________________________
consensus             ACGACTACCCGCAGCACAATTCTATTAAAAATCGGGCGCTTGAGACGGGAGCTTCTTGTG
 
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rJMSF028H05+                CCCAGACAGAGCATTACCAGAAGACGAAGAAAAGTTCTACACAAATTCTGTTGT
rJMSF017E18+          GACCGCCCCAGACAGAGCATTACCAGAAGACGAAGAAAAGTTCTACACAAATTCTGTTGT
                      ____________________________________________________________
consensus             GACCGCCCCAGACAGAGCATTACCAGAAGACGAAGAAAAGTTCTACACAAATTCTGTTGT
 
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rJMSF028H05+          TCAACTGCATGTCGGTGAGGGATCCTCAACTGCTCCTTCCGCGCTTGATGAGTGCTTGTG
rJMSF017E18+          TCAACTGCATGTCGGTGAGGGATCCTCAACTGCTCCTTCCGCGCTTGATGAGTGCTTGTG
                      ____________________________________________________________
consensus             TCAACTGCATGTCGGTGAGGGATCCTCAACTGCTCCTTCCGCGCTTGATGAGTGCTTGTG
 
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rJMSF028H05+          AAATGCACGGAATCTACTTTAAGAAGGCATTGTTTGTTCCTAACATATCAGTGTATAATA
rJMSF017E18+          AAATGCACGGAATCTACTTTAAGAAGGCATTGTTTGTTCCTAACATATCAGTGTATAATA
                      ____________________________________________________________
consensus             AAATGCACGGAATCTACTTTAAGAAGGCATTGTTTGTTCCTAACATATCAGTGTATAATA
 
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rJMSF028H05+          AGGTGGGTACCGGTTCTACGATTCCAGCTGATAATCAAGTAGATATCTCGTGGCAGTTGA
rJMSF017E18+          AGGTGGGTACCGGTTCTACGATTCCAGCTGATAATCAAGTAGATATCTCGTGGCAGTTGA
                      ____________________________________________________________
consensus             AGGTGGGTACCGGTTCTACGATTCCAGCTGATAATCAAGTAGATATCTCGTGGCAGTTGA
 
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rJMSF028H05+          CTCTTCAAAGATTCTGGGAAAACCTTGTCCGTGAGAAAGGCAGAGACATGGCGAAGAATG
rJMSF017E18+          CTCTTCAAAGATTCTGGGAAAACCTTGTCCGTGAGAA----AGAGACATGGCGAAGAATG
                      ____________________________________________________________
consensus             CTCTTCAAAGATTCTGGGAAAACCTTGTCCGTGAGAAAGGCAGAGACATGGCGAAGAATG
 
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rJMSF028H05+          CAGATCAAATATGTGATGAAGGTCCCGATGATACAGAGAAAGGAACTCGAAGTTGTGAAA
rJMSF017E18+          CAGATCAAATATGTGATGAAGGTCCCGATGATACAGAGAAAGGAACTCGAAGTTGTGAAA
                      ____________________________________________________________
consensus             CAGATCAAATATGTGATGAAGGTCCCGATGATACAGAGAAAGGAACTCGAAGTTGTGAAA
 
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rJMSF028H05+          ACAGTACAGTTTTTCCTTCGCTTCCAGTTGCAATTAACTGGCTCAGGGATAACGTTCGAA
rJMSF017E18+          GCAGTACAGTTTTTCCTTCGCTTCCAGTTGCAATTAACTGGCTCAGGGATAACGTTCGAA
                      ____________________________________________________________
consensus             GCAGTACAGTTTTTCCTTCGCTTCCAGTTGCAATTAACTGGCTCAGGGATAACGTTCGAA
 
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rJMSF028H05+          AGAATCAGTCCGTTCGCTTCCAGGTCCTAGTAACGGGGTCTTTACACCTCGTGGGTGACG
rJMSF017E18+          AGAATCAGTCCGTTCGCTTCCAGGTCCTAGTAACGGGGTCTTTACACCTCGTGGGTGACG
                      ____________________________________________________________
consensus             AGAATCAGTCCGTTCGCTTCCAGGTCCTAGTAACGGGGTCTTTACACCTCGTGGGTGACG
 
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rJMSF028H05+          TTCTGAAACTAGTGAAGAAATGAGGCTCTAAACGCTGTTTGGAGTCCTTTCCATTTGATT
rJMSF017E18+          TTCTGAAACTAGTGAAGAAATGAGGCTCTAAACGCTGTTTGGAGTCCTTTCCATTTGATT
                      ____________________________________________________________
consensus             TTCTGAAACTAGTGAAGAAATGAGGCTCTAAACGCTGTTTGGAGTCCTTTCCATTTGATT
 
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rJMSF028H05+          CTTTTCACAAACAGATCATACTACGCAAATACCAAAGGCAAGAATGTATTCCCGTGTTCC
rJMSF017E18+          CTTTTCACAAACAGATCATACTACGCAAATACCAAAGGCAAGAATGTATTCCCGTGTTCC
                      ____________________________________________________________
consensus             CTTTTCACAAACAGATCATACTACGCAAATACCAAAGGCAAGAATGTATTCCCGTGTTCC
 
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rJMSF028H05+          ATCCAGGTACATTTCCGTTTTCAAATGTTCATGTGAAGTACTCGTCCCATTTTAGTACTG
rJMSF017E18+          ATCCAGGTACATTTCCGTTTTCAAATGTTCATGTGAAGTACTCGTCCCATTTTAGTACTG
                      ____________________________________________________________
consensus             ATCCAGGTACATTTCCGTTTTCAAATGTTCATGTGAAGTACTCGTCCCATTTTAGTACTG
 
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rJMSF028H05+          ACATTTTCACGAGTTATAGAAAATAGAATACTCGTTGGTTTCATATCCATGTACTCTTT 
rJMSF017E18+          ACATTTTCACGAGTTATAGAAAATAGAATACTCGTTGGTTTCATATCCATGTACTCTTTA
                      ____________________________________________________________
consensus             ACATTTTCACGAGTTATAGAAAATAGAATACTCGTTGGTTTCATATCCATGTACTCTTTA