Contig 004238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016O02Sequence340000814 (3)ref|XP_011079723.1|2e-17PREDICTED: spermatogenesis-associated protein 20 [Sesamum indicum]740004238 (2)ref|XP_009775753.1|2e-106PREDICTED: spermatogenesis-associated protein 20 isoform X2 [Nicotiana sylvestr
JMSF024I01Sequence645000814 (3)ref|XP_009775752.1|4e-83PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Nicotiana sylvestr719004238 (2)ref|XP_009775753.1|5e-83PREDICTED: spermatogenesis-associated protein 20 isoform X2 [Nicotiana sylvestr

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016O02+                                                 CTCTATGAGTTTGGTGGTTCA
                      ____________________________________________________________
consensus                                                    CTCTATGAGTTTGGTGGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+                  GCTGAGCTGGGCACTTGAACTACAGGACATGCAGGATGAGCTCTTCCTTGAT
rJMSF016O02+          ATCTTTTGGCTGAGCTGGGCACTTGAACTACAGGACATGCAGGATGAGCTCTTCCTTGAT
                      ____________________________________________________________
consensus             ATCTTTTGGCTGAGCTGGGCACTTGAACTACAGGACATGCAGGATGAGCTCTTCCTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          AAAGAGGGAGGAGGTTATTTTTAATACCCCTGGAGAAGATCCTTCTGTTCTGCTTCGTGT
rJMSF016O02+          AAAGAGGGAGGAGGTTA-TTTTAATACCCCTGGAGAAGATCCTTCTGTTCTGCTTCGTGT
                      ____________________________________________________________
consensus             AAAGAGGGAGGAGGTTATTTTTAATACCCCTGGAGAAGATCCTTCTGTTCTGCTTCGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          GAAAGAAGACTACGATGGAGCTGAGCCATCGGGAAATTCCATTTCGGTAATCAATCTTGT
rJMSF016O02+          GAAAGAAGACTACGATGGAGCTGAGCCATCGGGAAATTCCATTTCGGTAATCAATCTTGT
                      ____________________________________________________________
consensus             GAAAGAAGACTACGATGGAGCTGAGCCATCGGGAAATTCCATTTCGGTAATCAATCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          GAGATTGGCCTCCATGGTTGCAGGTGGGAAATCTGAGCATTACAGAGACACTGCCCAGCA
rJMSF016O02+          GAGATTGGCCTCCATGGTTGCAGGTGGGAAATCTGAGCATTACAGAGACACTGCCCAGCA
                      ____________________________________________________________
consensus             GAGATTGGCCTCCATGGTTGCAGGTGGGAAATCTGAGCATTACAGAGACACTGCCCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          TGTTTTGGCAGTTTTCGAGAAGAGATTGGAAGGCACAGCTCTAGCATTGCCTTTGATGTG
rJMSF016O02+          TGTTTTGGCAGTTTTCGAGAAGAGATTGGAAGGCACAGCTCTAGCATTGCCTTTGATGTG
                      ____________________________________________________________
consensus             TGTTTTGGCAGTTTTCGAGAAGAGATTGGAAGGCACAGCTCTAGCATTGCCTTTGATGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          TTTGGCGGCTGACATGCTTGCTGCTCCTTCAAGGAAGCAGGTAGTCATTCTCGGGCCAAA
rJMSF016O02+          TTTGGCGGCTGACATGCTTGCTGCTCCTTCAAGGAAGCAGGTAGTCATTCTCGGGCCAAA
                      ____________________________________________________________
consensus             TTTGGCGGCTGACATGCTTGCTGCTCCTTCAAGGAAGCAGGTAGTCATTCTCGGGCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          GGGTTGCGACGACTTTGAAGACCTGATCGCTGCTGCTCATGCCGCTTATGATCCCAACAA
rJMSF016O02+          GGGTTGCGACGACTTTGAAGACCTGATCGCTGCTGCTCATGCCGCTTATGATCCCAACAA
                      ____________________________________________________________
consensus             GGGTTGCGACGACTTTGAAGACCTGATCGCTGCTGCTCATGCCGCTTATGATCCCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          GACGGTAATTCACATCGACCCTTCTGATGTAGAAGAGATGGGATTCTGGGTGGACATGAA
rJMSF016O02+          GACGGTAATTCACATCGACCCTTCTGATGTAGAAGAGATGGGATTCTGGGTGGACATGAA
                      ____________________________________________________________
consensus             GACGGTAATTCACATCGACCCTTCTGATGTAGAAGAGATGGGATTCTGGGTGGACATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          TGCTAATATTGCCTCAATGGCGAAAAGCAATTCCGCTGCTGACAAGAGCGTTGCACTCGT
rJMSF016O02+          TGCTAATATTGCCTCAATGGCGAAAAGCAATTCCGCTGCTGACAAGAGCGTTGCACTCGT
                      ____________________________________________________________
consensus             TGCTAATATTGCCTCAATGGCGAAAAGCAATTCCGCTGCTGACAAGAGCGTTGCACTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          GTGTCAAAATTTCACGTGTAGTCCTCCCATCAGCAACGCCGAGTCTCTTGTGTCTCTGCT
rJMSF016O02+          GTGTCAAAATTTCACGTGTAGTCCTCCCATCAGCAACGCCGAGTCTCTTGTGTCTCTGCT
                      ____________________________________________________________
consensus             GTGTCAAAATTTCACGTGTAGTCCTCCCATCAGCAACGCCGAGTCTCTTGTGTCTCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          ATCGCGGTACTCTGCTATCGCGGTAAAGCCACCCGGGAATTTTAATAGGGAATAAATACT
rJMSF016O02+          ATCGCGGTACTCTGCTATCGCGGTAAAGCCACCCGGGAATTTTAATAGGGAATAAATACT
                      ____________________________________________________________
consensus             ATCGCGGTACTCTGCTATCGCGGTAAAGCCACCCGGGAATTTTAATAGGGAATAAATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I01+          AAATATAGCAGACTGAAAATATGTTGCTGATGAGGTATGATGATACTTCTATTC      
rJMSF016O02+          AAATATAGCAGACTGAAAATATGTTGCTGATGAGGTATGATGATACTTCTATTCATGAGT
                      ____________________________________________________________
consensus             AAATATAGCAGACTGAAAATATGTTGCTGATGAGGTATGATGATACTTCTATTCATGAGT