| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021G22 | Sequence | 497 | 012877 (3) | ref|XP_004242591.1| | 5e-17 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Sol | 668 | 004232 (3) | gb|ACN26059.1| | 8e-79 | unknown [Zea mays] gb|AFW68477.1| hypothetical protein ZEAMMB73_483363 [Zea mays |
| JMSF011K23 | Sequence | 356 | 012877 (3) | ref|XP_004242591.1| | 8e-08 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Sol | 723 | 004232 (3) | emb|CAN75999.1| | 2e-95 | hypothetical protein VITISV_019163 [Vitis vinifera] |
| JMSF016C18 | Sequence | 471 | 012877 (3) | ref|XP_004242591.1| | 9e-18 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Sol | 778 | 004232 (3) | ref|XP_004982730.1| | 2e-102 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like |
This contig is upended
. : . : . : . : . : . :
rJMSF011K23+ TGATGATACTCCTGCTGT
rJMSF016C18+ TTTATAATATCGAGATTAAGGGATTGGAGAATCTGCCTCCTGATGATACTCCTGCTGT
____________________________________________________________
consensus TTTATAATATCGAGATTAAGGGATTGGAGAATCTGCCTCCTGATGATACTCCTGCTGT
. : . : . : . : . : . :
rJMSF011K23+ GTTTGTATCCAACCACCAGAGCTTTTTAGACATTTACACTCTCCTTACTCTTGGGCGAAG
rJMFF021G22+ GGGCGAAG
rJMSF016C18+ GTTTGTATCCAACCACCAGAGCTTTTTAGACATTTACACTCTCCTTACTCTTGGGCGAAG
____________________________________________________________
consensus GTTTGTATCCAACCACCAGAGCTTTTTAGACATTTACACTCTCCTTACTCTTGGGCGAAG
. : . : . : . : . : . :
rJMSF011K23+ CTTCAAATTCATTAGCAAGACTGCTATTTTCCTCTTTCCTATCATTGGTTGGGCCATGTA
rJMFF021G22+ CTTCAAATTCATTAGCAAGACTGCTATTTTCCTCTTTCCTATCATTGGTTGGGCCATGTA
rJMSF016C18+ CTTCAAATTCATTAGCAAGACTGCTATTTTCCTCTTTCCTATCATTGGTTGGGCCATGTA
____________________________________________________________
consensus CTTCAAATTCATTAGCAAGACTGCTATTTTCCTCTTTCCTATCATTGGTTGGGCCATGTA
. : . : . : . : . : . :
rJMSF011K23+ TCTGATGGGAACTATTCCCTTGAGGCGTATGGACACCAGAAGCCAATTAGATTGCCTTAA
rJMFF021G22+ TCTGATGGGAACTATTCCCTTGAGGCGTATGGACACCAGAAGCCAATTAGATTGCCTTAA
rJMSF016C18+ TCTGATGGGAACTATTCCCTTGAGGCGTATGGACACCAGAAGCCAATTAGATTGCCTTAA
____________________________________________________________
consensus TCTGATGGGAACTATTCCCTTGAGGCGTATGGACACCAGAAGCCAATTAGATTGCCTTAA
. : . : . : . : . : . :
rJMSF011K23+ GAGATGCATGGATCTTGTCACGAAGGGAGCATCTGTTTTTTTCTTCCCAGAGGGTACTCG
rJMFF021G22+ GAGATGCATGGATCTTGTCACGAAGGGAGCATCTGTTTTTTTCTTCCCAGAGGGTACTCG
rJMSF016C18+ GAGATGCATGGATCTTGTCACGAAGGGAGCATCTGTTTTTTTCTTCCCAGAGGGTACTCG
____________________________________________________________
consensus GAGATGCATGGATCTTGTCACGAAGGGAGCATCTGTTTTTTTCTTCCCAGAGGGTACTCG
. : . : . : . : . : . :
rJMSF011K23+ GAGTAAAGATGGAAAGCTAGGGGTTTTCAAGAAAGGTGCATTCAGTATTGCTGCAAAAAC
rJMFF021G22+ GAGTAAAGATGGAAAGCTAGGGGTTTTCAAGAAAGGTGCATTCAGTATTGCTGCAAAAAC
rJMSF016C18+ GAGTAAAGATGGAAAGCTAGGGGTTTTCAAGAAAGGTGCATTCAGTATTGCTGCAAAAAC
____________________________________________________________
consensus GAGTAAAGATGGAAAGCTAGGGGTTTTCAAGAAAGGTGCATTCAGTATTGCTGCAAAAAC
. : . : . : . : . : . :
rJMSF011K23+ TGGAGTTCCTGTTATTCCTATAACCCTTGTTGGAACTGGAAAAATCATGCCTGCAGGAAT
rJMFF021G22+ TGGAGTTCCTGTTATTCCTATAACCCTTGTTGGAACTGGAAAAATCATGCCTGCAGGAAT
rJMSF016C18+ TGGAGTTCCTGTTATTCCTATAACCCTTGTTGGAACTGGAAAAATCATGCCTGCAGGAAT
____________________________________________________________
consensus TGGAGTTCCTGTTATTCCTATAACCCTTGTTGGAACTGGAAAAATCATGCCTGCAGGAAT
. : . : . : . : . : . :
rJMSF011K23+ GGAGGGCAGATTAAATTGTGGGTCAGTTAAAGTTGTGATTCATCAGCCTATTGAGGGAAA
rJMFF021G22+ GGAGGGCAGATTAAATTGTGGGTCAGTTAAAGTTGTGATTCATCAGCCTATTGAGGGAAA
rJMSF016C18+ GGAGGGCAGATTAAATTGTGGGTCAGTTAAAGTTGTGATTCATCAGCCTATTGAGGGAAA
____________________________________________________________
consensus GGAGGGCAGATTAAATTGTGGGTCAGTTAAAGTTGTGATTCATCAGCCTATTGAGGGAAA
. : . : . : . : . : . :
rJMSF011K23+ TAATCCAGAAGCATTATGTAGTGAGGCAAGGAATGTGATATCAAATCAGCTTAATCTCCA
rJMFF021G22+ TAATCCAGAAGCATTATGTAGTGAGGCAAGGAATGTGATATCAAATCAGCTTAATCTCCA
rJMSF016C18+ TAATCCAGAAGCATTATGTAGTGAGGCAAGGAATGTGATATCAAATCAGCTTAATCTCCA
____________________________________________________________
consensus TAATCCAGAAGCATTATGTAGTGAGGCAAGGAATGTGATATCAAATCAGCTTAATCTCCA
. : . : . : . : . : . :
rJMSF011K23+ AGGATGAGAGATAAGAGCAGTATTCTAGTTCCACTTTAGGATCAAAAGGTTTAAAGGATT
rJMFF021G22+ AGGATGAGAGATAAGAGCAGTATTCTAGTTCCACTTTAGGATCAAAAGGTTTAAAGGATT
rJMSF016C18+ AGGATGAGAGATAAGAGCAGTATTCTAGTTCCACTTTAGGATCAAAAGGTTTAAAGGATT
____________________________________________________________
consensus AGGATGAGAGATAAGAGCAGTATTCTAGTTCCACTTTAGGATCAAAAGGTTTAAAGGATT
. : . : . : . : . : . :
rJMSF011K23+ TTCTGGCTTAAAAGTTACTCTCCAAGGTTTGTCAATCCTTAGGGTGTTTGGTTGGATGGA
rJMFF021G22+ TTCTGGCTTAAAAGTTACTCTCCAAGGTTTGTCAATCCTTAGGGTGTTTGGTTGGATGGA
rJMSF016C18+ TTCTGGCTTAAAAGTTACTCTCCAAGGTTTGTCAATCCTTAGGGTGTTTGGTTGGATGGA
____________________________________________________________
consensus TTCTGGCTTAAAAGTTACTCTCCAAGGTTTGTCAATCCTTAGGGTGTTTGGTTGGATGGA
. : . : . : . : . : . :
rJMSF011K23+ GGGAATTAGGAAGGAATTGTAATTTGGTGAGAATAAAGTAGGAATTCAAATTACATTGTT
rJMFF021G22+ GGGAATTAGGAAGGAATTGTAATTTGGTGAGAATAAAGTAGGAATTCAAATTACATTGTT
rJMSF016C18+ GGGAATTAGGAAGGAATTGTAATTTGGTGAGAATAAAGTAGGAATTCAAATTACATTGTT
____________________________________________________________
consensus GGGAATTAGGAAGGAATTGTAATTTGGTGAGAATAAAGTAGGAATTCAAATTACATTGTT
. : . : . : . : . : . :
rJMSF011K23+ TGGTAGGGAGGAATAAAATTATTTGGAATGAGAATGGAAGAAGTG
rJMFF021G22+ TGGTAGGGAGGAATAAAATTATTTGGAATGAGAATGGAAGAAGTGATATAAAGACTCAAA
rJMSF016C18+ TGGTAGGGAGGAATAAAATTATTTGGAATGAGAATGGAAGAAGTGATATAAAGACTCAAA
____________________________________________________________
consensus TGGTAGGGAGGAATAAAATTATTTGGAATGAGAATGGAAGAAGTGATATAAAGACTCAAA