Contig 004230:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN002B11Sequence576004230 (8)ref|XP_009620446.1|5e-35PREDICTED: subtilisin-like protease [Nicotiana tomentosiformis]
JMFN007M08Sequence586004230 (8)ref|XP_009620446.1|6e-35PREDICTED: subtilisin-like protease [Nicotiana tomentosiformis]
JMFN009E05Sequence627004230 (8)dbj|BAA06151.1|1e-34pit2 [Nicotiana tabacum] prf||2106387C Al-induced protein
JMFN018B24Sequence529004230 (8)ref|XP_009620446.1|2e-13PREDICTED: subtilisin-like protease [Nicotiana tomentosiformis]
JMFN019M08Sequence545004230 (8)dbj|BAA06151.1|5e-35pit2 [Nicotiana tabacum] prf||2106387C Al-induced protein
JMFN045A21Sequence575004230 (8)ref|XP_009620446.1|5e-35PREDICTED: subtilisin-like protease [Nicotiana tomentosiformis]
JMSF015L19Sequence471004230 (8)dbj|BAA06151.1|2e-35pit2 [Nicotiana tabacum] prf||2106387C Al-induced protein586004230 (8)dbj|BAA06151.1|5e-35pit2 [Nicotiana tabacum] prf||2106387C Al-induced protein

Alignment

This contig is upended


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JMFN007M08+                                         TTTTTTTGGGAAGATAAAATAACATTGATA
                      ____________________________________________________________
consensus                                           TTTTTTTGGGAAGATAAAATAACATTGATA
 
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JMFN007M08+           AAACTCTATATATAAAATTCATTAACACTCTCCTAATGGATAGTCCCATCCATTCCCTTC
JMFN045A21+           AAACTCTATATATAAAATTCATTAACACTCTCCTAATGGATAGTCCCATCCATTCCCTTC
JMFN002B11+           AAACTCTATATATAAAATTCATTAACACTCTCCTAATGGATAGTCCCATCCATTCCCTTC
JMFN019M08+                                                     GTCCCATCCATTCCCTTC
JMFN018B24+                                                  ATAGTCCCATCCATTCCCTTC
JMFN009E05+                       TAAAATTCATTAACACTCTCCTAATGGATAGTCCCATCCATTCCCTTC
                      ____________________________________________________________
consensus             AAACTCTATATATAAAATTCATTAACACTCTCCTAATGGATAGTCCCATCCATTCCCTTC
 
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JMFN007M08+           TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
JMFN045A21+           TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
JMFN002B11+           TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
JMFN019M08+           TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
JMFN018B24+           TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
JMFN009E05+           TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
rJMSF015L19-                        GTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
                      ____________________________________________________________
consensus             TTATTTTATACTCCGTACATGCGTAAGACAATTGATGTTCTAGTCATTACATAGTACAAA
 
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JMFN007M08+           CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
JMFN045A21+           CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
JMFN002B11+           CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
JMFN019M08+           CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
JMFN018B24+           CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGGCAGG
JMFN009E05+           CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
rJMSF015L19-          CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
                      ____________________________________________________________
consensus             CGAAAAGCGATGACATTATCTTATAACATTTCATACATTGAAGAGAAACGATGGGCCAGG
 
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JMFN007M08+           AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
JMFN045A21+           AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
JMFN002B11+           AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
JMFN019M08+           AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
JMFN018B24+           AGTCTATACAAACATAAGCAGCAGATATCCTTAGTGCGATATATGGGTTGTGATTCTTGT
JMFN009E05+           AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
JMSF015L19+              CTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
rJMSF015L19-          AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
                      ____________________________________________________________
consensus             AGTCTATACAAACATAAGCAGCAGATATCCTTAGTACGATATATGGGTTGTGATTCTTGT
 
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JMFN007M08+           CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
JMFN045A21+           CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
JMFN002B11+           CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
JMFN019M08+           CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
JMFN018B24+           CTCATGCAAGTTCAGTGTGTGCATGAATGTATATGCACTGTTTGAGTTCGGACAACTTTC
JMFN009E05+           CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
JMSF015L19+           CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
rJMSF015L19-          CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
                      ____________________________________________________________
consensus             CTCATGCAAGTCCAGTGTGTG-ATGAATGTAACTGCACTGTTTGACTTCGGACAACTTGC
 
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JMFN007M08+           AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
JMFN045A21+           AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
JMFN002B11+           AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
JMFN019M08+           AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
JMFN018B24+           AGCACGCCAGGCTTTTTGGAAAGCTCATGGACTTTGCGCAGTGAGTCACACTTGGCAGAC
JMFN009E05+           AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
JMSF015L19+           AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
rJMSF015L19-          AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
                      ____________________________________________________________
consensus             AGCACACCAGGCTTTTTGGAAAGCTCATCGAC-CTGCGCAG-GAGTCA-ACTTGGCAGA-
 
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JMFN007M08+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
JMFN045A21+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
JMFN002B11+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
JMFN019M08+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
JMFN018B24+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTGGCGGCATCCTCACT
JMFN009E05+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
JMSF015L19+           GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
rJMSF015L19-          GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
                      ____________________________________________________________
consensus             GAATCCACTCGCAGCGTGCTTGTAGGTGTACAGTATCGCCTCCTTCGCGGCATCCTCACT
 
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JMFN007M08+           GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
JMFN045A21+           GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
JMFN002B11+           GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
JMFN019M08+           GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
JMFN018B24+           GCCAACGACAGAAGCTAGGGTTTTTAGATGAAAATCCTGGTGTTTTACGCCCTCGTCGGG
JMFN009E05+           GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
JMSF015L19+           GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
rJMSF015L19-          GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
                      ____________________________________________________________
consensus             GCCAACGACAGAAGCGAGGGTTTTGAGATGAAAATCCTCGTGTTCTACGCCCTCGTCGGG
 
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JMFN007M08+           TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
JMFN045A21+           TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
JMFN002B11+           TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
JMFN019M08+           TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
JMFN018B24+           TTTGTGGGTGTAAAGCGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
JMFN009E05+           TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
JMSF015L19+           TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
rJMSF015L19-          TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
                      ____________________________________________________________
consensus             TTTGTGGGTGTAAA-CGATGTAGACCTTCGCGTCGGACGTTGATTGGGGTTGGGAATCGG
 
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JMFN007M08+           CCATCGCAGCGACGAACAAGAA                                      
JMFN045A21+           CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAA                   
JMFN002B11+           CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAAG                  
JMFN019M08+           CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAAGGTACAAGGGTG       
JMFN018B24+           CCATGGCACCTACGAACAACAAGG                                    
JMFN009E05+           CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAAGGTACAAGGGTGAGAAGAT
JMSF015L19+           CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAAGGTACAAGGGTGAGAAGAT
rJMSF015L19-          CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAAGGTACAAGGGTGAGAAGAT
                      ____________________________________________________________
consensus             CCATCGCAGCGACGAACAAGAAGGACAGTAGCAGAATCGAAGGTACAAGGGTGAGAAGAT
 
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JMFN009E05+           TTTGGGTTTTCGGCATTTCGCTATGATCGTATTTATAGAATTTA                
JMSF015L19+           TTTGGGTTTTCGGCATTTCGCTATGATCGTATTTATAGAATTTAGAACCGAAGATATTTC
rJMSF015L19-          TTTGGGTTTTCGGCATTTCGCTATGATCGTATTTATAGAATTTAGAACCGAAGATATTTC
                      ____________________________________________________________
consensus             TTTGGGTTTTCGGCATTTCGCTATGATCGTATTTATAGAATTTAGAACCGAAGATATTTC