Contig 004222:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014G10Sequence557006449 (3)ref|XP_009624585.1|6e-26PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [773004222 (3)gb|AHF22108.1|1e-87bifunctional GTP cyclohydrolase II/34-dihydroxy-2-butanone 4-phosphate synthase
JMSF050F15Sequence698006449 (3)ref|XP_009624585.1|4e-69PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [741004222 (3)dbj|BAA08113.1|2e-113GTP cyclohydrolase II [Arabidopsis thaliana]
JMSF050O01Sequence586006449 (3)ref|XP_009624585.1|2e-43PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [771004222 (3)gb|AHF22108.1|3e-84bifunctional GTP cyclohydrolase II/34-dihydroxy-2-butanone 4-phosphate synthase

Alignment

This contig is upended


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rJMSF050F15+                                GNTACAGATCAGTCTNGGATGGGATCGAACACATTGCA
                      ____________________________________________________________
consensus                                   GNTACAGATCAGTCTNGGATGGGATCGAACACATTGCA
 
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rJMSF050F15+          ATGGTTAAGGGCGAGATTGGGGATGGGCAAGATATTCTTGTTCGAGTGCACTCGGAGTGC
                      ____________________________________________________________
consensus             ATGGTTAAGGGCGAGATTGGGGATGGGCAAGATATTCTTGTTCGAGTGCACTCGGAGTGC
 
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rJMSF050F15+          CTTACGGGGGACATATTTGGTTCAGCAAGATGTGATTGCGGGAGCCAATTGGCACTTGCA
rJMSF050O01+                          TTGGTTCAGCAAGATGTGATTGCGGGAGCCAATTGNCACCTGCA
rJMSF014G10+                          TTGGTTCAGCAAGATGTGATTGCGGGAGCCAATTGGCACTTGCA
                      ____________________________________________________________
consensus             CTTACGGGGGACATATTTGGTTCAGCAAGATGTGATTGCGGGAGCCAATTGGCACTTGCA
 
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rJMSF050F15+          ATGCAACAAATCGAGGCGGCTGGCAGGGGCGTTTTGGTCTACCTTCGTGGCCACGAAGGA
rJMSF050O01+          ATGCAACAAATCGAGGCGGCTGGCAGGGGCGTTTTGGTCTACCTTCGTGGCCACGAAGGA
rJMSF014G10+          ATGCAACAAATCGAGGCGGCTGGCAGGGGCGTTTTGGTCTACCTTCGTGGCCACGAAGGA
                      ____________________________________________________________
consensus             ATGCAACAAATCGAGGCGGCTGGCAGGGGCGTTTTGGTCTACCTTCGTGGCCACGAAGGA
 
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rJMSF050F15+          AGAGGAATCGGTTTGGGCCACAAACTCCGGGCCTACACTNTACAGGATGCTGGGCGTGAC
rJMSF050O01+          AGAGGAATCGGTTTGGGCCACAAACTCCGGGCCTACACTCTACAGGATGCTGGGCGTGAC
rJMSF014G10+          AGAGGAATCGGTTTGGGCCACAAACTCCGGGCCTACACTCTACAGGATGCTGGGCGTGAC
                      ____________________________________________________________
consensus             AGAGGAATCGGTTTGGGCCACAAACTCCGGGCCTACACTCTACAGGATGCTGGGCGTGAC
 
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rJMSF050F15+          ACTGTTGAAGCAAACGAGGAACTCGGTTTACCAGTTGATTCAAGAGAGTATGGAATCGGT
rJMSF050O01+          ACTGTTGAAGCAAACGAGGAACTCGGTTTACCAGTTGATTCAAGAGAGTATGGAATCGGT
rJMSF014G10+          ACTGTTGAAGCAAACGAGGAACTCGGTTTACCAGTTGATTCAAGAGAGTATGGAATCGGT
                      ____________________________________________________________
consensus             ACTGTTGAAGCAAACGAGGAACTCGGTTTACCAGTTGATTCAAGAGAGTATGGAATCGGT
 
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rJMSF050F15+          GCACAGATACTAAGGGATCTTGGCGTTCGAACTATGAAGCTGATGACAAATAACCCCGCA
rJMSF050O01+          GCACAGATACTAAGGGATCTTGGCGTTCGAACTATGAAGCTGATGACAAATAACCCCGCA
rJMSF014G10+          GCACAGATACTAAGGGATCTTGGCGTTCGAACTATGAAGCTGATGACAAATAACCCCGCA
                      ____________________________________________________________
consensus             GCACAGATACTAAGGGATCTTGGCGTTCGAACTATGAAGCTGATGACAAATAACCCCGCA
 
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rJMSF050F15+          AAATACGTTGGGCTCAAGGGCTACGGTTTGTCAGTCGCGGGAAGGGTACCCCTCTTAACT
rJMSF050O01+          AAATACGTTGGGCTCAAGGGCTACGGTTTGTCAGTCGCGGGAAGGGTACCCCTCTTAACT
rJMSF014G10+          AAATACGTTGGGCTCAAGGGCTACGGTTTGTCAGTCGCGGGAAGGGTACCCCTCTTAACT
                      ____________________________________________________________
consensus             AAATACGTTGGGCTCAAGGGCTACGGTTTGTCAGTCGCGGGAAGGGTACCCCTCTTAACT
 
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rJMSF050F15+          CCCATCACAAAAGACAACAAAAGATACCTGGAAACGAAGCGCGCCAAAATGGGGCACATA
rJMSF050O01+          CCCATCACAAAAGACAACAAAAGATACCTGGAAACGAAGCGCGCCAAAATGGGGCACATA
rJMSF014G10+          CCCATCACAAAAGACAACAAAAGATACCTGGAAACGAAGCGCGCCAAAATGGGGCACATA
                      ____________________________________________________________
consensus             CCCATCACAAAAGACAACAAAAGATACCTGGAAACGAAGCGCGCCAAAATGGGGCACATA
 
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rJMSF050F15+          TATGGCTTGAACTTCAAAGAGCTTATACACAACCCAAGCGAAACCGACAGCAAAACCAAC
rJMSF050O01+          TATGGCTTGAACTTCAAAGAGCTTATACACAACCCAAGCGAAACCGACAGCAAAACCAAC
rJMSF014G10+          TATGGCTTGAACTTCAAAGAGCTTATACACAACCCAAGCGAAACCGACAGCAAAACCAAC
                      ____________________________________________________________
consensus             TATGGCTTGAACTTCAAAGAGCTTATACACAACCCAAGCGAAACCGACAGCAAAACCAAC
 
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rJMSF050F15+          ATCAAGAATGCGCCCAATGTTCCAGATTCATAAGTTTCAGTCTAACAATAATTGTGAAAA
rJMSF050O01+          ATCAAGAATGCGCCCAATGTTCCAGATTCATAAGTTTCAGTCTAACAATAATTGTGAAAA
rJMSF014G10+          ATCAAGAATGCGCCCAATGTTCCAGATTCATAAGTTTCAGTCTAACAATAATTGTGAAAA
                      ____________________________________________________________
consensus             ATCAAGAATGCGCCCAATGTTCCAGATTCATAAGTTTCAGTCTAACAATAATTGTGAAAA
 
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rJMSF050F15+          CTGAAATGTTTTTGCAAGGATGTTACTGACATTCTTGGGATTTTAACCTNGATTGATTTA
rJMSF050O01+          CTGAAATGTTTTTGCAAGGATGTTACTGACATTCTTGGGATTTTAACCTAGATTGATTTA
rJMSF014G10+          CTGAAATGTTTTTGCAAGGATGTTACTGACATTCTTGGGATTTTAACCTAGATTGATTTA
                      ____________________________________________________________
consensus             CTGAAATGTTTTTGCAAGGATGTTACTGACATTCTTGGGATTTTAACCTAGATTGATTTA
 
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rJMSF050F15+          TTCATATTGTTTNTGGATCAGAGATT                                  
rJMSF050O01+          TTCATATTGTTTTTGGATCAGAGATTCTTGTGATTTTGAATGTGGTAATATATGGAAGTC
rJMSF014G10+          TTCATATTGTTTTTGGATCAGAGATTCTTGTGATTTTGAATGTGGTAATATATGGAAGTC
                      ____________________________________________________________
consensus             TTCATATTGTTTTTGGATCAGAGATTCTTGTGATTTTGAATGTGGTAATATATGGAAGTC
 
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rJMSF050O01+          TCAAGATTTAGTTAGTTTAGTTGGGCAATGCAAATTGCTAATATGAATAGGGATTGTTAA
rJMSF014G10+          TCAAGATTTAGTTAGTTTAGTTGGGCAATGCAAATTGCTAATATGAATAGGGATTGTTAA
                      ____________________________________________________________
consensus             TCAAGATTTAGTTAGTTTAGTTGGGCAATGCAAATTGCTAATATGAATAGGGATTGTTAA
 
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rJMSF050O01+          ATGGAAAGCTGATTTGGATCTGTTTGTCTGTGTTATTAGGTAAGAAGTGTTGGGCATTC 
rJMSF014G10+          ATGGAAAGCTGATTTGGATCTGTTTGTCTGTGTTATTAGGTAAGAAGTGTTGGGCATTCT
                      ____________________________________________________________
consensus             ATGGAAAGCTGATTTGGATCTGTTTGTCTGTGTTATTAGGTAAGAAGTGTTGGGCATTCT