Contig 004221:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN030P05Sequence616004221 (3)gb|AAG31173.1|1e-144COP1 [Ipomoea nil]
JMSF014B12Sequence476006457 (2)gb|AAG31173.1|3e-91COP1 [Ipomoea nil]787004221 (3)gb|AAG31173.1|4e-134COP1 [Ipomoea nil]
JMSF015C13Sequence384006457 (2)gb|AAG31173.1|2e-60COP1 [Ipomoea nil]728004221 (3)gb|AAG31173.1|3e-146COP1 [Ipomoea nil]

Alignment

This contig is upended


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JMFN030P05-                            AGTACACTAAAAACCACATTGCTAGTAGTGATTACGATGGAAT
                      ____________________________________________________________
consensus                              AGTACACTAAAAACCACATTGCTAGTAGTGATTACGATGGAAT
 
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JMFN030P05-           AGTGACTGTCTGGGATGTGACTACGAGACAGAGTGTTATGGAATATGAAGAACATGAAAA
                      ____________________________________________________________
consensus             AGTGACTGTCTGGGATGTGACTACGAGACAGAGTGTTATGGAATATGAAGAACATGAAAA
 
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JMFN030P05-           ACGGGCATGGAGTGTCGATTTTTCTCGAACAGATCCCTCAATGCTTGTATCCGGTAGTGA
rJMSF015C13+            GGGCATGGAGTGTCGATTTTTCTCGAACAGATCCCTCAATGCTTGTATCCGGTAGTGA
rJMSF014B12+                                                              GGTAGTGA
                      ____________________________________________________________
consensus             ACGGGCATGGAGTGTCGATTTTTCTCGAACAGATCCCTCAATGCTTGTATCCGGTAGTGA
 
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JMFN030P05-           TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCAAGAAGCAAGTGCCCTTAATATTGACAT
rJMSF015C13+          TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCANGAAGCAAGTGCCCTTAATATTGACAT
rJMSF014B12+          TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCAAGAAGCAAGTGCCCTTAATATTGACAC
                      ____________________________________________________________
consensus             TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCAAGAAGCAAGTGCCCTTAATATTGACAT
 
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JMFN030P05-           GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
rJMSF015C13+          GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
rJMSF014B12+          GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
                      ____________________________________________________________
consensus             GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
 
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JMFN030P05-           CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
rJMSF015C13+          CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
rJMSF014B12+          CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
                      ____________________________________________________________
consensus             CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
 
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JMFN030P05-           TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
rJMSF015C13+          TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
rJMSF014B12+          TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
                      ____________________________________________________________
consensus             TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
 
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JMFN030P05-           ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
rJMSF015C13+          ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
rJMSF014B12+          ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
                      ____________________________________________________________
consensus             ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
 
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JMFN030P05-           TGTATTTAGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
rJMSF015C13+          TGTATTTNGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
rJMSF014B12+          TGTATTTAGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
                      ____________________________________________________________
consensus             TGTATTTAGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
 
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JMFN030P05-           CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
rJMSF015C13+          CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
rJMSF014B12+          CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
                      ____________________________________________________________
consensus             CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
 
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JMFN030P05-           TGTGACTTGGCATANGTTTGGTTCCCCAGACGT                           
rJMSF015C13+          TGTGACTTGGCATAGGTTTGGTTCCCCAGACGTAGACGAAGCCGATGAAGACGTAACGTC
rJMSF014B12+          TGTGACTTGGCATAGGTTTGGTTCCCCAGACGTAGACGAAGCCGATGAAGACGTAACGTC
                      ____________________________________________________________
consensus             TGTGACTTGGCATAGGTTTGGTTCCCCAGACGTAGACGAAGCCGATGAAGACGTAACGTC
 
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rJMSF015C13+          TTTCTTCATCAGTGCAGTATGCTGGAAGAGTGATAGCCCTACAATGCTAGCTGCTAACAG
rJMSF014B12+          TTTCTTCATCAGTGCAGTATGCTGGAAGAGTGATAGCCCTACAATGCTAGCTGCTAACAG
                      ____________________________________________________________
consensus             TTTCTTCATCAGTGCAGTATGCTGGAAGAGTGATAGCCCTACAATGCTAGCTGCTAACAG
 
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rJMSF015C13+          CCAGGGAACCATCAAGGTTCTGGTGCTTGCTGCCTGACGTTGTGAGTTGTAATATAGTGG
rJMSF014B12+          CCAGGGAACCATCAAGGTTCTGGTGCTTGCTGCCTGA-GTTGTGAGTTGTAATATAGTGG
                      ____________________________________________________________
consensus             CCAGGGAACCATCAAGGTTCTGGTGCTTGCTGCCTGACGTTGTGAGTTGTAATATAGTGG
 
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rJMSF015C13+          TTATAGAGCNTGATTAAAGTTTAATTACATCCAAGTATTATTGTTCCCAATGAAGAAATT
rJMSF014B12+          TTATAGAGCTTGATTAAAGTTTAATTACATCCAAGTATTATTGTTCCCAATGAAGAAATT
                      ____________________________________________________________
consensus             TTATAGAGCTTGATTAAAGTTTAATTACATCCAAGTATTATTGTTCCCAATGAAGAAATT
 
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rJMSF015C13+          CATCATTGTT                                                  
rJMSF014B12+          CATCATTGTTTTGTAGATATGGGCGAGCCAATATTCTAAAATCTAAAATAGAAACTTGTT
                      ____________________________________________________________
consensus             CATCATTGTTTTGTAGATATGGGCGAGCCAATATTCTAAAATCTAAAATAGAAACTTGTT
 
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rJMSF014B12+          TAGAATGAATTCAAAATCCCCTAATATTATAAGTATAAACTAATTATATAGTACTGTAAT
                      ____________________________________________________________
consensus             TAGAATGAATTCAAAATCCCCTAATATTATAAGTATAAACTAATTATATAGTACTGTAAT