Contig 004218:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012P12Sequence454004218 (2)ref|XP_007027785.1|3e-41Small nuclear ribonucleoprotein G, putative isoform 1 [Theobroma cacao] gb|EOY0475004218 (2)ref|XP_007027785.1|4e-41Small nuclear ribonucleoprotein G, putative isoform 1 [Theobroma cacao] gb|EOY0

Alignment

This contig is upended


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JMSF012P12-                GGTTCTGTTCCTTCTTCGTTTTCCCTCTCCTGGTGAAGTAAAAGCTGTTAGGGTT
rJMSF012P12+               GGTTCTGTTCCTTCTTCGTTTTCCCTCTCCTGGTGAAGTAAAAGCTGTTAGGGTT
                      ____________________________________________________________
consensus                  GGTTCTGTTCCTTCTTCGTTTTCCCTCTCCTGGTGAAGTAAAAGCTGTTAGGGTT
 
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JMSF012P12-           TAACGATGAGCCGATCGGGTCAACCGCCGGATCTCAAGAAGTACATGGACAAGAAGCTGC
rJMSF012P12+          TAACGATGAGCCGATCGGGTCAACCGCCGGATCTCAAGAAGTACATGGACAAGAAGCTGC
                      ____________________________________________________________
consensus             TAACGATGAGCCGATCGGGTCAACCGCCGGATCTCAAGAAGTACATGGACAAGAAGCTGC
 
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JMSF012P12-           AAATCAAGTTAAATGCTAACAGAATGGTGGTTGGAACACTTAGGGGTTTTGATCAGTTCA
rJMSF012P12+          AAATCAAGTTAAATGCTAACAGAATGGTGGTTGGAACACTTAGGGGTTTTGATCAGTTCA
                      ____________________________________________________________
consensus             AAATCAAGTTAAATGCTAACAGAATGGTGGTTGGAACACTTAGGGGTTTTGATCAGTTCA
 
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JMSF012P12-           TGAATCTGGTTGTGGACAACACCGTTGAAGTAAATGGCAATGAAAGAACTGACATTGGCA
rJMSF012P12+          TGAATCTGGTTGTGGACAACACCGTTGAAGTAAATGGCAATGAAAGAACTGACATTGGCA
                      ____________________________________________________________
consensus             TGAATCTGGTTGTGGACAACACCGTTGAAGTAAATGGCAATGAAAGAACTGACATTGGCA
 
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JMSF012P12-           TGGTGGTCCTTAGGGGGAACAGTGTGGTTACCATTGAAGCACTTGAACCTTTGCCAGAAC
rJMSF012P12+          TGGTGGTCCTTAGGGGGAACAGTGTGGTTACCATTGAAGCACTTGAACCTTTGCCAGAAC
                      ____________________________________________________________
consensus             TGGTGGTCCTTAGGGGGAACAGTGTGGTTACCATTGAAGCACTTGAACCTTTGCCAGAAC
 
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JMSF012P12-           TTAGTCATTTGCATCACAGGATGGTAACTTTCAATGTATTGTGTAGTTAAAGTTCACTAC
rJMSF012P12+          TTAGTCATTTGCATCACAGGATGGTAACTTTCAATGTATTGTGTAGTTAAAGTTCACTAC
                      ____________________________________________________________
consensus             TTAGTCATTTGCATCACAGGATGGTAACTTTCAATGTATTGTGTAGTTAAAGTTCACTAC
 
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JMSF012P12-           TTCAGATCTTGTACCATGAACTAACTGATACAAAAGTTATCAAATTGAAATACATTGAAT
rJMSF012P12+          TTCAGATCTTGTACCATGAACTAACTGATACAAAAGTTATCAAATTGAAATACATTGAAT
                      ____________________________________________________________
consensus             TTCAGATCTTGTACCATGAACTAACTGATACAAAAGTTATCAAATTGAAATACATTGAAT
 
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JMSF012P12-           TGTATTGAAGAGCATGATTGTTC                                     
rJMSF012P12+          TGTATTGAAGAGCATGATTGTTCCAGTGTTAAACCAGAAGTTTGGTGGACGAATGGATGT
                      ____________________________________________________________
consensus             TGTATTGAAGAGCATGATTGTTCCAGTGTTAAACCAGAAGTTTGGTGGACGAATGGATGT