| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021M01 | Sequence | 467 | 003590 (4) | ref|XP_006351366.1| | 6e-82 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | 658 | 004212 (3) | ref|XP_006351366.1| | 9e-92 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] |
| JMSF011N13 | Sequence | 345 | 003590 (4) | ref|XP_006351366.1| | 1e-43 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | 727 | 004212 (3) | ref|XP_006351366.1| | 6e-101 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] |
| JMSF034F03 | Sequence | 652 | 003590 (4) | ref|XP_006351366.1| | 2e-97 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | 690 | 004212 (3) | ref|XP_006351366.1| | 4e-101 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF034F03+ TCGTCGGAT
rJMSF011N13+ GTCGGAT
____________________________________________________________
consensus TCGTCGGAT
. : . : . : . : . : . :
rJMSF034F03+ AACTTATACAGAAGCCATTACCATTCTTGAGGAAGCAACCAAAGTCAAAAAATTTGAGAA
rJMFF021M01+ CCAAAGTCAAAAAATTTGAGAA
rJMSF011N13+ AACTTATACAGAAGCCATTACCATTCTTGAGGAAGCAACCAAAGTCAAAAAATTTGAGAA
____________________________________________________________
consensus AACTTATACAGAAGCCATTACCATTCTTGAGGAAGCAACCAAAGTCAAAAAATTTGAGAA
. : . : . : . : . : . :
rJMSF034F03+ TAAAGTAGAATGGGGGATTGACTTGGCATCTGAACATGAAAGGTACTTAACTGAAGAGCA
rJMFF021M01+ TAAAGTAGAATGGGGGATTGACTNGGCATCTGAACATGAAAGGTACTTAACTGAAGAGCA
rJMSF011N13+ TAAAGTAGAATGGGGGATTGACTTGGCATCTGAACATGAAAGGTACTTAACTGAAGAGCA
____________________________________________________________
consensus TAAAGTAGAATGGGGGATTGACTTGGCATCTGAACATGAAAGGTACTTAACTGAAGAGCA
. : . : . : . : . : . :
rJMSF034F03+ TTTTAAAGCACCCACTATTGTGTACAACTACCCAAAAGGGATCAAAGCATTTTACATGAA
rJMFF021M01+ TTTTAAAGCACCCACTATTGTGTACAACTACCCAAAAGGGATCAAAGCATTTTACATGAA
rJMSF011N13+ TTTTAAAGCACCCACTATTGTGTACAACTACCCAAAAGGGATCAAAGCATTTTACATGAA
____________________________________________________________
consensus TTTTAAAGCACCCACTATTGTGTACAACTACCCAAAAGGGATCAAAGCATTTTACATGAA
. : . : . : . : . : . :
rJMSF034F03+ GGTCAATGAAGACAAGAAGACAGTTGCTGCCATGGACCTGCTTGTCCCAAAGGTGGGAGA
rJMFF021M01+ GGTCAATGAAGACAAGAAGACAGTTGCTGCCATGGACCTGCTTGTCCCAAAGGTGGGAGA
rJMSF011N13+ GGTCAATGAAGACAAGAAGACAGTTGCTGCCATGGACCTGCTTGTCCCAAAGGTGGGAGA
____________________________________________________________
consensus GGTCAATGAAGACAAGAAGACAGTTGCTGCCATGGACCTGCTTGTCCCAAAGGTGGGAGA
. : . : . : . : . : . :
rJMSF034F03+ ACTAATCGGTGGAAGTCAAAGGGAAGAGAATTATGAGGTCCTCAGAGATAGGATACTGGA
rJMFF021M01+ ACTAATCGGTGGAAGTCAAAGGGAAGAGAATTATGAGGTCCTCAGAGATAGGATACTGGA
rJMSF011N13+ ACTAATCGGTGGAAGTCAAAGGGAAGAGAATTATGAGGTCCTCAGAGATAGGATACTGGA
____________________________________________________________
consensus ACTAATCGGTGGAAGTCAAAGGGAAGAGAATTATGAGGTCCTCAGAGATAGGATACTGGA
. : . : . : . : . : . :
rJMSF034F03+ GATGGGTTTGCCACTAGAGCCGTATGAGTGGTATCTTGACCTTAGGCGCTATGGTACTGT
rJMFF021M01+ GATGGGTTTGCCACTAGAGCCGTATGAGTGGTATCTTGACCTTAGGCGCTATGGTACTGT
rJMSF011N13+ GATGGGTTTGCCACTAGAGCCGTATGAGTGGTATCTTGACCTTAGGCGCTATGGTACTGT
____________________________________________________________
consensus GATGGGTTTGCCACTAGAGCCGTATGAGTGGTATCTTGACCTTAGGCGCTATGGTACTGT
. : . : . : . : . : . :
rJMSF034F03+ GAAACACAGCGGTTTTGGTTTGGGTTTCGAGAGAATGATTCTGTTTGCAACGGGGGTGGA
rJMFF021M01+ GAAACACAGCGGTTTTGGTTTGGGTTTCGAGAGAATGATTCTGTTTGCAACGGGGGTGGA
rJMSF011N13+ GAAACACAGCGGTTTTGGTTTGGGTTTCGAGAGAATGATTCTGTTTGCAACGGGGGTGGA
____________________________________________________________
consensus GAAACACAGCGGTTTTGGTTTGGGTTTCGAGAGAATGATTCTGTTTGCAACGGGGGTGGA
. : . : . : . : . : . :
rJMSF034F03+ AAACATCCGAGATGTCATTCCCTTCCCGCGATATCCTGGAAGAGCTGATCTCTGAAATGA
rJMFF021M01+ AAACATCCGAGATGTCATTCCCTTCCCGCGATATCCTGGAAGAGCTGATCTCTGAAATGA
rJMSF011N13+ AAACATCCGAGATGTCATTCCCTTCCCGCGATATCCTGGAAGAGCTGATCTCTGAAATGA
____________________________________________________________
consensus AAACATCCGAGATGTCATTCCCTTCCCGCGATATCCTGGAAGAGCTGATCTCTGAAATGA
. : . : . : . : . : . :
rJMSF034F03+ TGTTTCATAGATTGTTATTGGATCCAAGAGATTTTGAAATCGAAATAGCCTTGTGTGCCC
rJMFF021M01+ TGTTTCATAGATTGTTATTGGATCCAAGAGATTTTGAAATCGAAATAGCCTTGTGTGCCC
rJMSF011N13+ TGTTTCATAGATTGTTATTGGATCCAAGAGATTTTGAAATCGAAATAGCCTTGTGTGCCC
____________________________________________________________
consensus TGTTTCATAGATTGTTATTGGATCCAAGAGATTTTGAAATCGAAATAGCCTTGTGTGCCC
. : . : . : . : . : . :
rJMSF034F03+ CTTGAATTTCTTTACTCCCTATTTAGATAAATATGAATACATATGATGACGATTTGTCAT
rJMFF021M01+ CTTGAATTTCTTTACTCCCTATTTAGATAAATATGAATACATATGATGACGATTTGTCAT
rJMSF011N13+ CTTGAATTTCTTTACTCCCTATTTAGATAAATATGAATACATATGATGACGATTTGTCAT
____________________________________________________________
consensus CTTGAATTTCTTTACTCCCTATTTAGATAAATATGAATACATATGATGACGATTTGTCAT
. : . : . : . : . : . :
rJMSF034F03+ ACCCTTTTCACTGAATTGAAGATGTAGGATCTCTGTAATCTCCATTGTTCAATTATTGCA
rJMFF021M01+ ACCCTTTTCACTGAATTGAAGATGTAGGATCTCTGTAATCTCCATTGTTCAATTATTGCA
rJMSF011N13+ ACCCTTTTCACTGAATTGAAGATGTAGGATCTCTGTAATCTCCATTGTTCAATTATTGCA
____________________________________________________________
consensus ACCCTTTTCACTGAATTGAAGATGTAGGATCTCTGTAATCTCCATTGTTCAATTATTGCA
. : . : . : . : . : . :
rJMSF034F03+ CCAAGACTTT
rJMFF021M01+ CCAAGACTTT
rJMSF011N13+ CCAAGACTTTTGTAAAATCTGCTACATTACTTAACTAAAGTATATCCATGAATTTGATAC
____________________________________________________________
consensus CCAAGACTTTTGTAAAATCTGCTACATTACTTAACTAAAGTATATCCATGAATTTGATAC