Contig 004211:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002C02Sequence312013204 (2)734004211 (2)emb|CDP12051.1|2e-89unnamed protein product [Coffea canephora]
JMSF011M14Sequence348013204 (2)ref|XP_006387688.1|8e-24DNA repair protein and transcription factor, partial [Populus trichocarpa] gb|E755004211 (2)emb|CDP12051.1|7e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF002C02+                                  TGGTGATAATTCTATTGATATTCCTTAAGCAAATGN
rJMSF011M14+                                   GGTGATAATTCTATTGATATTCCTGAAGCAAATGT
                      ____________________________________________________________
consensus                                     TGGTGATAATTCTATTGATATTCCTTAAGCAAATGT
 
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rJMSF002C02+          TATAATACAAATTTCATCACATGCCGGGTCAAGACGACAGGAAGCTCAACGTCTTGGGCG
rJMSF011M14+          TATAATACAAATTTCATCACATGCCGGGTCAAGACGACAGGAAGCTCAACGTCTTGGGCG
                      ____________________________________________________________
consensus             TATAATACAAATTTCATCACATGCCGGGTCAAGACGACAGGAAGCTCAACGTCTTGGGCG
 
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rJMSF002C02+          TATTCTTAGGGCCAAGGGGCGTCTTCAAGATAGGATGGCTGGAGGTAAAGAGGAGTATAA
rJMSF011M14+          TATTCTTAGGGCCAAGGGGCGTCTTCAAGATAGGATGGCTGGAGGTAAAGAGGAGTATAA
                      ____________________________________________________________
consensus             TATTCTTAGGGCCAAGGGGCGTCTTCAAGATAGGATGGCTGGAGGTAAAGAGGAGTATAA
 
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rJMSF002C02+          TGCATTCTTTTACTCTCTTGTATCGACAGATACACAGGAAATGTATTATTCAACTAAAAG
rJMSF011M14+          TGCATTCTTTTACTCTCTTGTATCGACAGATACACAGGAAATGTATTATTCAACTAAAAG
                      ____________________________________________________________
consensus             TGCATTCTTTTACTCTCTTGTATCGACAGATACACAGGAAATGTATTATTCAACTAAAAG
 
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rJMSF002C02+          ACAACAGTTCCTGATTGATCAAGGGTATAGCTTCAAGGTGATCACAAACTTGCCACCTCC
rJMSF011M14+          ACAACAGTTCCTGATTGATCAAGGGTATAGCTTCAAGGTGATCACAAACTTGCCACCTCC
                      ____________________________________________________________
consensus             ACAACAGTTCCTGATTGATCAAGGGTATAGCTTCAAGGTGATCACAAACTTGCCACCTCC
 
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rJMSF002C02+          TGATTCAGGACCTGAGTTGAGTTACCATCATCTTGATGACCAGCTTGCACTTCTAGGAAA
rJMSF011M14+          TGATTCAGGACCTGAGTTGAGTTACCATCATCTTGATGACCAGCTTGCACTTCTAGGAAA
                      ____________________________________________________________
consensus             TGATTCAGGACCTGAGTTGAGTTACCATCATCTTGATGACCAGCTTGCACTTCTAGGAAA
 
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rJMSF002C02+          GGTACTAAGTGCAGGCGATGATGCAGTTGGGTTGGAGCAACTGGAAGAAGATGCAGATGA
rJMSF011M14+          GGTACTAAGTGCAGGCGATGATGCAGTTGGGTTGGAGCAACTGGAAGAAGATGCAGATGA
                      ____________________________________________________________
consensus             GGTACTAAGTGCAGGCGATGATGCAGTTGGGTTGGAGCAACTGGAAGAAGATGCAGATGA
 
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rJMSF002C02+          TATAGCCCTTCAGAAAGCTCGACGTTCTATGGGTTCTATGAGTGCAATGTCAGGAGCAAA
rJMSF011M14+          TATAGCCCTTCAGAAAGCTCGACGTTCTATGGGTTCTATGAGTGCAATGTCAGGAGCAAA
                      ____________________________________________________________
consensus             TATAGCCCTTCAGAAAGCTCGACGTTCTATGGGTTCTATGAGTGCAATGTCAGGAGCAAA
 
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rJMSF002C02+          GGGAATGCTTTATATGGAATACAATGCTGGGAAAAAAGGGCCCGGAGGGCATGTGCAGAA
rJMSF011M14+          GGGAATGCTTTATATGGAATACAATGCTGGGAAAAAAGGGCCCGGAGGGCATGTGCAGAA
                      ____________________________________________________________
consensus             GGGAATGCTTTATATGGAATACAATGCTGGGAAAAAAGGGCCCGGAGGGCATGTGCAGAA
 
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rJMSF002C02+          GAGCAAGCCGAAAGATCCATCCAAGAGACACCACTTATTCAAGAAACGCTTTGGCTGAGG
rJMSF011M14+          GAGCAAGCCGAAAGATCCATCCAAGAGACACCACTTATTCAAGAAACGCTTTGGCTGAGG
                      ____________________________________________________________
consensus             GAGCAAGCCGAAAGATCCATCCAAGAGACACCACTTATTCAAGAAACGCTTTGGCTGAGG
 
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rJMSF002C02+          CTCGAGAGTACTCACCGTTGTGTATTATCTCTAACCATTACTCTGTTGTATGTCTTAGTT
rJMSF011M14+          CTCGAGAGTACTCACCGTTGTGTATTATCTCTAACCATTACTCTGTTGTATGTCTTAGTT
                      ____________________________________________________________
consensus             CTCGAGAGTACTCACCGTTGTGTATTATCTCTAACCATTACTCTGTTGTATGTCTTAGTT
 
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rJMSF002C02+          TAAGTGAGAGAGTAGGTGTATCTGTAATCTGATATTCTGACAAAGCAGCTTAAAATATAC
rJMSF011M14+          TAAGTGAGAGAGTAGGTGTATCTGTAATCTGATATTCTGACAAAGCAGCTTAAAATATAC
                      ____________________________________________________________
consensus             TAAGTGAGAGAGTAGGTGTATCTGTAATCTGATATTCTGACAAAGCAGCTTAAAATATAC
 
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rJMSF002C02+          TAGCAGAATAGGCTATGGTTGTGAATTTGTGATATGTT                      
rJMSF011M14+          TAGCAGAATAGGCTATGGTTGTGAATTTGTGATATGTTGGTATACACTATACCAGTATGT
                      ____________________________________________________________
consensus             TAGCAGAATAGGCTATGGTTGTGAATTTGTGATATGTTGGTATACACTATACCAGTATGT