| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003F24 | Sequence | 388 | 006760 (8) | ref|XP_006342009.1| | 3e-27 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 680 | 004207 (7) | ref|XP_011083887.1| | 4e-73 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti |
| JMSF010A03 | Sequence | 267 | 006760 (8) | ref|XP_009767345.1| | 1e-17 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 807 | 004207 (7) | ref|XP_009767345.1| | 2e-93 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti |
| JMSF010K08 | Sequence | 386 | 006760 (8) | ref|XP_006342009.1| | 4e-27 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 766 | 004207 (7) | gb|EYU38854.1| | 1e-89 | hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata] |
| JMSF015H19 | Sequence | 227 | 006760 (8) | ref|XP_009767345.1| | 1e-11 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 779 | 004207 (7) | gb|EYU38854.1| | 2e-90 | hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata] |
| JMSF038F12 | Sequence | 643 | 006760 (8) | ref|XP_006342010.1| | 9e-84 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 929 | 004207 (7) | gb|EYU38854.1| | 1e-115 | hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata] |
| JMSF050P01 | Sequence | 564 | 006760 (8) | ref|XP_006342009.1| | 5e-70 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 797 | 004207 (7) | gb|EYU38854.1| | 5e-90 | hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata] |
| JMSF052J20 | Sequence | 683 | 006760 (8) | ref|XP_006342009.1| | 9e-90 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti | 863 | 004207 (7) | ref|XP_009767345.1| | 3e-92 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti |
This contig is upended
. : . : . : . : . : . :
rJMSF038F12+ TATTATGATGACCCAATGGTCTTGAGATATTTAGAGAGGTTAG
____________________________________________________________
consensus TATTATGATGACCCAATGGTCTTGAGATATTTAGAGAGGTTAG
. : . : . : . : . : . :
rJMSF038F12+ AGGGAGTTGGTGGTTCACCTTTGGCTGCTGCTGCAGCTATTGCAAGAATTGGGGCTGAAG
____________________________________________________________
consensus AGGGAGTTGGTGGTTCACCTTTGGCTGCTGCTGCAGCTATTGCAAGAATTGGGGCTGAAG
. : . : . : . : . : . :
rJMSF038F12+ CTACTGCAGTGCTTGATAGTGTGAAGGTTAGTGCAATTCAGGCATTGCAGAAGGTTATTC
rJMSF010A03+ TTC
____________________________________________________________
consensus CTACTGCAGTGCTTGATAGTGTGAAGGTTAGTGCAATTCAGGCATTGCAGAAGGTTATTC
. : . : . : . : . : . :
rJMSF038F12+ CCCTTGGTGATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
rJMSF010A03+ CCCTTGGTGATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCNACAG
rJMSF015H19+ CAGCNACAG
rJMSF050P01+ ATGGGGAAACTAGTGNTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
rJMSF052J20+ ATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
____________________________________________________________
consensus CCCTTGGTGATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
. : . : . : . : . : . :
rJMSF038F12+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
rJMSF010A03+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACNTTTCCAGAAAACATGGCTGGTTTTGCC
rJMSF015H19+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
rJMSF050P01+ AAAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGNAAACATGGCTGGTTTTGCC
rJMSF052J20+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
____________________________________________________________
consensus -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
. : . : . : . : . : . :
rJMSF038F12+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF010A03+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF015H19+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF050P01+ GAGAGATCACCTTTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF052J20+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF010K08+ TGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
____________________________________________________________
consensus GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
. : . : . : . : . : . :
rJMSF038F12+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF010A03+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF015H19+ TGTTGTTAAGATTACATCNGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF050P01+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF052J20+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF003F24+ AGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF010K08+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
____________________________________________________________
consensus TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
. : . : . : . : . : . :
rJMSF038F12+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF010A03+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF015H19+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF050P01+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF052J20+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF003F24+ GTTTTTATCTAAATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF010K08+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
____________________________________________________________
consensus GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
. : . : . : . : . : . :
rJMSF038F12+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF010A03+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF015H19+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF050P01+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF052J20+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF003F24+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF010K08+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
____________________________________________________________
consensus CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
. : . : . : . : . : . :
rJMSF038F12+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF010A03+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF015H19+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF050P01+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF052J20+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF003F24+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF010K08+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
____________________________________________________________
consensus TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
. : . : . : . : . : . :
rJMSF038F12+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF010A03+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF015H19+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF050P01+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF052J20+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF003F24+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF010K08+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
____________________________________________________________
consensus TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
. : . : . : . : . : . :
rJMSF038F12+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF010A03+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF015H19+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF050P01+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF052J20+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF003F24+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF010K08+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
____________________________________________________________
consensus TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
. : . : . : . : . : . :
rJMSF038F12+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF010A03+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF015H19+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF050P01+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF052J20+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF003F24+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF010K08+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
____________________________________________________________
consensus AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
. : . : . : . : . : . :
rJMSF038F12+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF010A03+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF015H19+ CAACTCTTGAAGAATNTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF050P01+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF052J20+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF003F24+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF010K08+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
____________________________________________________________
consensus CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
. : . : . : . : . : . :
rJMSF038F12+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF010A03+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF015H19+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF050P01+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF052J20+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF003F24+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF010K08+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
____________________________________________________________
consensus ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
. : . : . : . : . : . :
rJMSF038F12+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAAT
rJMSF010A03+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF015H19+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF050P01+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF052J20+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF003F24+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF010K08+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
____________________________________________________________
consensus TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
. : . : . : . : . : . :
rJMSF010A03+ CCAATTTATGAACTCCTTTGTGCCACA
rJMSF015H19+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATT
rJMSF050P01+ CCAATTTATGAACTCCTTTGTGCCACA
rJMSF052J20+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
rJMSF003F24+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
rJMSF010K08+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
____________________________________________________________
consensus CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
. : . : . : . : . : . :
rJMSF052J20+ TTGTCAAGTAGAGGTTCTT
rJMSF003F24+ TNGTCAAGTAGAGGTTCTT
rJMSF010K08+ TTGTCAAGTAGAGGTTCTTTAGAAAAAACCATACTTTCCATTAATAGTGTTTTTTGCTAC
____________________________________________________________
consensus TTGTCAAGTAGAGGTTCTTTAGAAAAAACCATACTTTCCATTAATAGTGTTTTTTGCTAC