Contig 004206:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010F07Sequence308009509 (6)781004206 (2)emb|CBI28627.3|5e-124unnamed protein product [Vitis vinifera]
JMSF043A03Sequence641009509 (6)ref|XP_004249911.1|2e-29PREDICTED: probable receptor protein kinase TMK1 [Solanum lycopersicum]591004206 (2)emb|CBI28627.3|4e-65unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF010F07+                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
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rJMSF010F07+          ATTTTGGACTTGTTCGACTTGCCCCTGAAGGGAAAGGCTCAATCGAGACGAGGATTGCTG
                      ____________________________________________________________
consensus             ATTTTGGACTTGTTCGACTTGCCCCTGAAGGGAAAGGCTCAATCGAGACGAGGATTGCTG
 
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rJMSF010F07+          GAACATTTGGATATTTGGCACCCGAATATGCAGTAACTGGGAGAGTAACTACGAAGGTAG
                      ____________________________________________________________
consensus             GAACATTTGGATATTTGGCACCCGAATATGCAGTAACTGGGAGAGTAACTACGAAGGTAG
 
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rJMSF010F07+          ATGTATTTAGTTTTGGTGTGATCTTGATGGAACTGATCACGGGCAGAAAGGCTCTCGACG
                      ____________________________________________________________
consensus             ATGTATTTAGTTTTGGTGTGATCTTGATGGAACTGATCACGGGCAGAAAGGCTCTCGACG
 
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rJMSF010F07+          AGAGCCAACCCGAGGAGAGCATGCATCTCGTGACATGGTTCCGAAGGATGTACTTAAACA
                      ____________________________________________________________
consensus             AGAGCCAACCCGAGGAGAGCATGCATCTCGTGACATGGTTCCGAAGGATGTACTTAAACA
 
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rJMSF043A03+                                                                     A
rJMSF010F07+          AGGACACCTTCCATAAGGCAATCGACCCGACCCTTGATCTCGACGAGGAAACGCTCGCTA
                      ____________________________________________________________
consensus             AGGACACCTTCCATAAGGCAATCGACCCGACCCTTGATCTCGACGAGGAAACGCTCGCTA
 
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rJMSF043A03+          GCATCAGCACCGTAGCTGAGCTTGCTGGGCACTGCTGTGCGAGGGAGCCATATCAAAGGC
rJMSF010F07+          GCATCAGCACCGTAGCTGAGCTTGCTGGGCACTGCTGTGCGAGGGAGCCATATCAAAGGC
                      ____________________________________________________________
consensus             GCATCAGCACCGTAGCTGAGCTTGCTGGGCACTGCTGTGCGAGGGAGCCATATCAAAGGC
 
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rJMSF043A03+          CCGACATGGGTCACGTGGTCAACGTCCTTTCTTCTTTGGTCGAGCTTTGGAGGCCCTCGG
rJMSF010F07+          CCGACATGGGTCACGTGGTCAACGTCCTTTCTTCTTTGGTCGAGCTTTGGAGGCCCTCGG
                      ____________________________________________________________
consensus             CCGACATGGGTCACGTGGTCAACGTCCTTTCTTCTTTGGTCGAGCTTTGGAGGCCCTCGG
 
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rJMSF043A03+          AGCAGAGCTCATCAGACGACATTTATGGCACTGACCTAGACATGTCCCTGCCACAGGCAC
rJMSF010F07+          AGCAGAGCTCATCAGACGACATTTATGGCACTGACCTAGACATGTCCCTGCCACAGGCAC
                      ____________________________________________________________
consensus             AGCAGAGCTCATCAGACGACATTTATGGCACTGACCTAGACATGTCCCTGCCACAGGCAC
 
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rJMSF043A03+          TAAAGAAATGGCAGGCGTATGAAGGTACGAGCCAGCTCGACGACTCCTCGTCTTCTTCGT
rJMSF010F07+          TAAAGAAATGGCAGGCGTATGAAGGTACGAGCCAGCTCGACGACTCCTCGTCTTCTTCGT
                      ____________________________________________________________
consensus             TAAAGAAATGGCAGGCGTATGAAGGTACGAGCCAGCTCGACGACTCCTCGTCTTCTTCGT
 
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rJMSF043A03+          ATCTTCCTAGCTTGGACAACACCCAAACGAGCATACCTACCCGACCATATGGATTCGCCG
rJMSF010F07+          ATCTTCCTAGCTTGGACAACACCCAAACGAGCATACCTACCCGACCATATGGATTCGCCG
                      ____________________________________________________________
consensus             ATCTTCCTAGCTTGGACAACACCCAAACGAGCATACCTACCCGACCATATGGATTCGCCG
 
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rJMSF043A03+          ATTCATTCACATCTGCAGATGGCAGGTGATCGAGGAGTCGTTACGTTATGTTTCGCTGTT
rJMSF010F07+          ATTCATTCACATCTGCAGATGGCAGGTGATCGAGGAGTCGTTACGTTATGTTTCGCTGTT
                      ____________________________________________________________
consensus             ATTCATTCACATCTGCAGATGGCAGGTGATCGAGGAGTCGTTACGTTATGTTTCGCTGTT
 
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rJMSF043A03+          CATTCTCTCTCGTGTGATAATGTAATCTCATATGTCTCTTGTATTTCCTTCCCTGTCTAC
rJMSF010F07+          CATTCTCTCTCGTGTGATAATGTAATCTCATATGTCTCTTGTATTTCCTTCCCTGTCTAC
                      ____________________________________________________________
consensus             CATTCTCTCTCGTGTGATAATGTAATCTCATATGTCTCTTGTATTTCCTTCCCTGTCTAC
 
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rJMSF043A03+          TTTTTTGGCCGCTTAACTTTAGTGTTCCATTAGTGCAGAATGGTATT             
rJMSF010F07+          TTTTTTGGCCGCTTAACTTTAGTGTTCCATTAGTGCAGAATGGTATTGGACATGATAACT
                      ____________________________________________________________
consensus             TTTTTTGGCCGCTTAACTTTAGTGTTCCATTAGTGCAGAATGGTATTGGACATGATAACT