| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN006K14 | Sequence | 517 | 004203 (12) | ref|XP_009785004.1| | 63.9 | PREDICTED: uncharacterized protein LOC104233313 [Nicotiana sylvestris] | |||||
| JMFN009H06 | Sequence | 488 | 004203 (12) | ref|XP_009785004.1| | 64.3 | PREDICTED: uncharacterized protein LOC104233313 [Nicotiana sylvestris] | |||||
| JMSF004B02 | Sequence | 277 | 004203 (12) | ref|XP_009619637.1| | 4e-05 | PREDICTED: mechanosensitive ion channel protein 10-like, partial [Nicotiana tom | 102 | 004203 (12) | |||
| JMSF004B04 | Sequence | 293 | 010692 (3) | 300 | 004203 (12) | ||||||
| JMSF009J01 | Sequence | 383 | 004203 (12) | emb|CDP13453.1| | 5e-10 | unnamed protein product [Coffea canephora] | 497 | 004203 (12) | emb|CDP13453.1| | 5e-14 | unnamed protein product [Coffea canephora] |
| JMSF010J01 | Sequence | 160 | 004203 (12) | 750 | 002782 (3) | ref|XP_009620220.1| | 200 | PREDICTED: uncharacterized protein LOC104112091 [Nicotiana tomentosiformis] | |||
| JMSF010P19 | Sequence | 254 | 004203 (12) | ref|XP_009619637.1| | 5e-08 | PREDICTED: mechanosensitive ion channel protein 10-like, partial [Nicotiana tom | 455 | 004203 (12) | ref|XP_009785004.1| | 63.9 | PREDICTED: uncharacterized protein LOC104233313 [Nicotiana sylvestris] |
| JMSF023G16 | Sequence | 512 | 004203 (12) | ref|XP_009785004.1| | 63.9 | PREDICTED: uncharacterized protein LOC104233313 [Nicotiana sylvestris] | 456 | 004203 (12) | ref|XP_009785004.1| | 63.9 | PREDICTED: uncharacterized protein LOC104233313 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN009H06+ TATTAAAGTAGAAAACGGAGTAGAAATGAGAGAGAGATTCA
JMFN006K14+ AAAGTAGAAAACGGAGTAGAAATGAGAGAGAGATTCA
JMSF023G16+ GAGAGAGATTCA
____________________________________________________________
consensus TATTAAAGTAGAAAACGGAGTAGAAATGAGAGAGAGATTCA
. : . : . : . : . : . :
JMFN009H06+ AAGTTTCTCATCACATTACATTACATTACATTAAATTAAAGCAAATAATAATATATGTAG
JMFN006K14+ AAGTTTCTCATCACATTACATTACATTACATTAAATTAAAGCAAATAATAATATATGTAG
rJMSF004B04- AATAATAATATATGTAG
JMSF023G16+ AAGTTTCTCATCACATTACATTACATTACATTAAATTAAAGCAAATAATAATATATGTAG
rJMSF010P19- AATTAAAGCAAATAATAATATATGTAG
rJMSF023G16- AAATTAAAGCAAATAATAATATATGTAG
rJMSF009J01- AATAATAATATATGTAG
____________________________________________________________
consensus AAGTTTCTCATCACATTACATTACATTACATTAAATTAAAGCAAATAATAATATATGTAG
. : . : . : . : . : . :
JMFN009H06+ TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
JMFN006K14+ TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
rJMSF004B04- TAATTAAGTNCTTAGCTTCTCTTGACAGGGTCAANGTTGGAAACGCCAATAACAGCTCCG
JMSF023G16+ TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
rJMSF010P19- TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
rJMSF023G16- TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
rJMSF009J01- TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
____________________________________________________________
consensus TAATTAAGTACTTAGCTTCTCTTGACAGGGTCAAAGTTGGAAACGCCAATAACAGCTCCA
. : . : . : . : . : . :
JMFN009H06+ ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
JMFN006K14+ ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
rJMSF004B02- ACAATGACTGCAANCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
rJMSF004B04- ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
JMSF023G16+ ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
rJMSF010P19- ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
rJMSF023G16- ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
JMSF009J01+ TCAGCAAGAAGTTCTTCAGCGAC
rJMSF009J01- ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
____________________________________________________________
consensus ACAATGACTGCAACCACAACCCCTCCCGCCACTATGCTCAGCAAGAAGTTCTTCAGCGAC
. : . : . : . : . : . :
JMFN009H06+ GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
JMFN006K14+ GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
rJMSF004B02- GGGCTCACCGCCGCCTCCGCCGCCTCGGGAANCACCATCGAA
rJMSF004B04- GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGTG
JMSF023G16+ GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
rJMSF010P19- GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
JMSF004B02+ TCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGTG
JMSF010P19+ GCGGCG
rJMSF023G16- GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
JMSF009J01+ GGGCTCACCGCCGCTTCCGCCGCNTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
JMSF010J01+ AAGCAGTCAAGGCGGCGGCG
rJMSF009J01- GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
____________________________________________________________
consensus GGGCTCACCGCCGCCTCCGCCGCCTCGGGAACCACCATCGAAGCAGTCAAGGCGGCGGCG
. : . : . : . : . : . :
JMFN009H06+ GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
JMFN006K14+ GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
rJMSF004B04- GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
JMSF023G16+ GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
rJMSF010P19- GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
JMSF004B02+ GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
JMSF010P19+ GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
rJMSF023G16- GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
JMSF009J01+ GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
JMSF010J01+ GTGAGTCCAGTGATGGCCTTNTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
rJMSF009J01- GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
____________________________________________________________
consensus GTGAGTCCAGTGATGGCCTTCTCCTTCAAAGAGGCCGAGATTTGGAGCCGCTTGCTTGAT
. : . : . : . : . : . :
JMFN009H06+ CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
JMFN006K14+ CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
rJMSF004B04- CTTGAGCAGACNACGGACTTTGAGGNCCGCCTCGCCGGTAATG
JMSF023G16+ CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
rJMSF010P19- CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
JMSF004B02+ CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
JMSF010P19+ CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
rJMSF023G16- CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
JMSF009J01+ ATTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
JMSF010J01+ ATTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGNTGCG
rJMSF009J01- ATTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
____________________________________________________________
consensus CTTGAGCAGACGACGGACTTTGAGGGCCGCCTCGCCGGTAATGGGTTGAAGAAGGCTGCG
. : . : . : . : . : . :
JMFN009H06+ GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
JMFN006K14+ GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
JMSF023G16+ GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
rJMSF010P19- GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
JMSF004B02+ GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
JMSF010P19+ GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
rJMSF023G16- GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
JMSF009J01+ GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
JMSF010J01+ GCGCCGGGCGGCTGCACCCT
rJMSF009J01- GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
____________________________________________________________
consensus GCGCCGGGCGGCTGCACCCTCTTCTGGCTGGCTGCGATCGGCGTAGCCATTGACATTGAG
. : . : . : . : . : . :
JMFN009H06+ GCCATTTTGCTCTCTGATCTGTAGTTT
JMFN006K14+ GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
JMSF023G16+ GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
rJMSF010P19- GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
JMSF004B02+ GCCATTTTGCTCTCTGATCTGTAATTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
JMSF010P19+ GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
rJMSF023G16- GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
JMSF009J01+ GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
rJMSF009J01- GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
____________________________________________________________
consensus GCCATTTTGCTCTCTGATCTGTAGTTTTGTCGATCTAGCTAATGGGGAAACTGTTTTCTG
. : . : . : . : . : . :
JMSF023G16+ AGATCAGC
rJMSF010P19- AGATCAGC
JMSF010P19+ AGATCAGC
rJMSF023G16- AGATCAGC
JMSF009J01+ AGATCAGAAGAAGAAGAAATGGAGGGGATGAACAATTGAAGGAAATGGTAATGATAGCCC
rJMSF009J01- AGATCAGAAGAAGAAGAAATGGAGGGGATGAACAATTGAAGGAAATGGTAATGATAGCCC
____________________________________________________________
consensus AGATCAGCAGAAGAAGAAATGGAGGGGATGAACAATTGAAGGAAATGGTAATGATAGCCC