Contig 004201:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF005M01-                                            AAGCAGTGCATAATAACAATCATAGTT
JMSF009F03-                                            AAGCAGTGCATAATAACAATCATAGTT
JMSF030E14-                                         GGCAAGCAGTGCATAATAACAATCATAGTT
                      ____________________________________________________________
consensus                                           GGCAAGCAGTGCATAATAACAATCATAGTT
 
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JMSF005M01-           TCTTAAAGTAACAAGAGTTTCCAGCCATGGCCTCCATTGTTGCCTTGTTGAGCTCATTGA
JMSF009F03-           TCTTAAAGTAACAAGAGTTTCCAGCCATGGCCTCCATTGTTGCCTTGTTGAGCTCATTGA
JMSF030E14-           TCTTAAAGTAACAAGAGTTTCCAGCCATGGCCTCCATTGTTGCCTTGTTGAGCTCATTGA
                      ____________________________________________________________
consensus             TCTTAAAGTAACAAGAGTTTCCAGCCATGGCCTCCATTGTTGCCTTGTTGAGCTCATTGA
 
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JMSF005M01-           TGCTTGTCTTCTCCATCATTTCTCTGGGCAATGCACTGAGCTCAAACTACTATGAGAAGA
JMSF009F03-           TGCTTGTCTTCTCCATCATTTCTCTGGGCAATGCACTGAGCTCAAACTACTATGAGAAGA
JMSF030E14-           TGCTTGTCTTCTCCATCATTTCTCTGGGCAATGCACTGAGCTCAAACTACTATGAGAAGA
                      ____________________________________________________________
consensus             TGCTTGTCTTCTCCATCATTTCTCTGGGCAATGCACTGAGCTCAAACTACTATGAGAAGA
 
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JMSF005M01-           CATGTCCCCAGGCAGAGAATGCAGTGACACAGGTTGTGAAGAAGGCCTCCATGGCAGACA
JMSF009F03-           CATGTCCCCAGGCAGAGAATGCAGTGACACAGGTTGTGAAGAAGGCCTCCATGGCAGACA
JMSF030E14-           CATGTCCCCAGGCAGAGAATGCAGTGACACAGGTTGTGAAGAAGGCCTCCATGGCAGACA
                      ____________________________________________________________
consensus             CATGTCCCCAGGCAGAGAATGCAGTGACACAGGTTGTGAAGAAGGCCTCCATGGCAGACA
 
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JMSF005M01-           AAACTGTTCTTGCTGCTCTGCTGAGGATGCATTTCCATGACTGTTTTATAAGGGGCTGTG
JMSF009F03-           AAACTGTTCTTGCTGCTCTGCTGAGGATGCATTTCCATGACTGTTTTATAAGGGGCTGTG
JMSF030E14-           AAACTGTTCTTGCTGCTCTGCTGAGGATGCATTTCCATGACTGTTTTATAAGGGGCTGTG
                      ____________________________________________________________
consensus             AAACTGTTCTTGCTGCTCTGCTGAGGATGCATTTCCATGACTGTTTTATAAGGGGCTGTG
 
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JMSF005M01-           ATGCATCAGTGTTGCTGAACTCAAAGAAGAGTGCTGCAGAGAAGAATGGACCACCTAATC
JMSF009F03-           ATGCATCAGTGTTGCTGAACTCAAAGAAGAGTGCTGCAGAGAAGAATGGACCACCTAATC
JMSF030E14-           ATGCATCAGTGTTGCTGAACTCAAAGAAGAGTGCTGCAGAGAAGAATGGACCACCTAATC
                      ____________________________________________________________
consensus             ATGCATCAGTGTTGCTGAACTCAAAGAAGAGTGCTGCAGAGAAGAATGGACCACCTAATC
 
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JMSF005M01-           TGTCCCTGCACGCATTCTATGTCATTGATGATGCAAAGAAAGCAGTGGAAGCAATCTGCC
JMSF009F03-           TGTCCCTGCACGCATTCTATGTCATTGATGATGCAAAGAAAGCAGTGGAAGCAATCTGCC
JMSF030E14-           TGTCCCTGCACGCATTCTATGTCATTGATGATGCAAAGAAAGCAGTGGAAGCAATCTGCC
                      ____________________________________________________________
consensus             TGTCCCTGCACGCATTCTATGTCATTGATGATGCAAAGAAAGCAGTGGAAGCAATCTGCC
 
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JMSF005M01-           CCGGTGTTGTCTCCTGTGCTGAT                                     
JMSF009F03-           C                                                           
JMSF030E14-           CCGGTGTTGTCTCCTGTGCTGATATTTTGGCGTTTGCAGCAAGAGATGCTGTTGTCATAG
rJMSF030E14+                                      GGCGTTTGCAGCAAGAGATGCTGTTGTCATAG
rJMSF009F03+                                      GGCGTTTGCAGCAAGAGATGCTGGTGTCATAG
                      ____________________________________________________________
consensus             CCGGTGTTGTCTCCTGTGCTGATATTTTGGCGTTTGCAGCAAGAGATGCTGTTGTCATAG
 
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JMSF030E14-           CTGGTGGGCCATACTGGGATGTCCCAAAAGGAAGAAAAGATGGGAGAGTATCAAAAGCCA
rJMSF030E14+          CTGGTGGGCCATACTGGGATGTCCCAAAAGGAAGAAAAGATGGGAGAGTATCAAAAGCCA
rJMSF009F03+          CTGGTGGGCCATACTGGGATGTCCCAAAAGGAAGAAAAGATGGGAGAGTATCAAAAGCCA
                      ____________________________________________________________
consensus             CTGGTGGGCCATACTGGGATGTCCCAAAAGGAAGAAAAGATGGGAGAGTATCAAAAGCCA
 
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JMSF030E14-           GTGAAACCACACAACTGCCAGGTCCAGCCTTCAACCTATCTCAACTGCAGAAGAGCTTCT
rJMSF030E14+          GTGAAACCACACAACTGCCAGGTCCAGCCTTCAACCTATCTCAACTGCAGAAGAGCTTCT
rJMSF009F03+          GTGAAACCACACAACTGCCAGGTCCAGCCTTCAACCTATCTCAACTGCAGAAGAGCTTCT
                      ____________________________________________________________
consensus             GTGAAACCACACAACTGCCAGGTCCAGCCTTCAACCTATCTCAACTGCAGAAGAGCTTCT
 
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JMSF030E14-           CACAGAGAGGTCTATCAATGGCAGACCTGGTGGCCCTCTCAGGTGGGCACACCATAGGCT
rJMSF030E14+          CACAGAGAGGTCTATCAATGGCAGACCTGGTGGCCCTCTCAGGTGGGCACACCATAGGCT
rJMSF009F03+          CACAGAGAGGTCTATCAATGGCAGACCTGGTGGCCCTCTCAGGTGGGCACACCATAGGCT
                      ____________________________________________________________
consensus             CACAGAGAGGTCTATCAATGGCAGACCTGGTGGCCCTCTCAGGTGGGCACACCATAGGCT
 
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JMSF030E14-           TCTCCCACTGTTCTTCC                                           
rJMSF030E14+          TCTCCCACTGTTCTTCCTTCAACAACAGACTCCACAACTTCAATGCCACCCATGATGTTG
rJMSF009F03+          TCTCCCACTGTTCTTCCTTCAACAACAGACTCCACAACTTCAATGCCACCCATGATGTTG
                      ____________________________________________________________
consensus             TCTCCCACTGTTCTTCCTTCAACAACAGACTCCACAACTTCAATGCCACCCATGATGTTG
 
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rJMSF005M03+                                                                 CAGCA
rJMSF030E14+          ATCCCACACTTCACCCCACCATTGCTGCCAACCTGAAAACCATCTGTCCCCTGAACAGCA
rJMSF009F03+          ATCCCACACTTCACCCCACCATTGCTGCCAACCTGAAAACCATCTGTCCCCTGAACAGCA
                      ____________________________________________________________
consensus             ATCCCACACTTCACCCCACCATTGCTGCCAACCTGAAAACCATCTGTCCCCTGAACAGCA
 
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rJMSF005M03+          GATCCAAGAATGCAGGAACCAGCATGGACCCTTCTTCCACANCTTTTGACAACAACTATT
rJMSF030E14+          GATCCAAGAATGCAGGAACCAGCATGGACCCTTCTTCCACAACTTTTGACAACAACTATT
rJMSF009F03+          GATCCAAGAATGCAGGAACCAGCATGGACCCTTCTTCCACAACTTTTGACAACAACTATT
                      ____________________________________________________________
consensus             GATCCAAGAATGCAGGAACCAGCATGGACCCTTCTTCCACAACTTTTGACAACAACTATT
 
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rJMSF005M03+          ACAAGCTAATTGTCCAGGGGAAAAGCCTCTTCTCCTCAGACCAGGCTTTGTTCACCAACC
rJMSF030E14+          ACAAGCTAATTGTCCAGGGGAAAAGCCTCTTCTCCTCAGACCAGGCTTTGTTCACCAACC
rJMSF009F03+          ACAAGCTAATTGTCCAGGGGAAAAGCCTCTTCTCCTCAGACCAGGCTTTGTTCACCAACC
                      ____________________________________________________________
consensus             ACAAGCTAATTGTCCAGGGGAAAAGCCTCTTCTCCTCAGACCAGGCTTTGTTCACCAACC
 
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rJMSF005M03+          CAAACACCAAGTCCCTGGTTTTGCAGTATGCCAACTCAAAACAGGCTTTCTCTAAGGCTT
rJMSF030E14+          CAAACACCAAGTCCCTGGTTTTGCAGTATGCCAACTCAAAACAGGCTTTCTTTAAGGCTT
rJMSF009F03+          CAAACACCAAGTCCCTGGTTTTGCAGTATGCCAACTCAAAACAGGCTTTCTTTAAGGCTT
                      ____________________________________________________________
consensus             CAAACACCAAGTCCCTGGTTTTGCAGTATGCCAACTCAAAACAGGCTTTCTTTAAGGCTT
 
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rJMSF005M03+          TNGCAAACTCCATGATCAAGATGAGCAGCATTACAGGAGGACAGGAAGTCAGAAAATATT
rJMSF030E14+          TTGCAAACTCCATGATCAAGATGAGCAGCATTACAGGAGGACAGGAAGTCAGAAAATATT
rJMSF009F03+          TTGCAAACTCCATGATCAAGATGAGCAGCATTACAGGAGGACAGGAAGTCAGAAAATATT
                      ____________________________________________________________
consensus             TTGCAAACTCCATGATCAAGATGAGCAGCATTACAGGAGGACAGGAAGTCAGAAAATATT
 
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rJMSF005M03+          GCTGGATAGCTAATTAGATTAGCCTCCAAAGTNTATATCCTTTCTAGTGAGTGTAGATAG
rJMSF030E14+          GCTGGATAGCTAATTAGATTAGCCTCCAAAGTTTATATCCTTTCTAGTGAGTGTAGATAG
rJMSF009F03+          GCTGGATAGCTAATTAGATTAGCCTCCAAAGTTTATATCCTTTCTAGTGAGTGTAGATAG
                      ____________________________________________________________
consensus             GCTGGATAGCTAATTAGATTAGCCTCCAAAGTTTATATCCTTTCTAGTGAGTGTAGATAG
 
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rJMSF005M03+          TCCAGCAAAATGGGCTGTCTTTCATATATAAATCTCATTTTCTTTCTTTACCTGCAGAGT
rJMSF030E14+          TCCAGCAAAATGGGCTGTCTTTCATATATAAATCTCATTTTCTTTCTTTACCTGCAGAGT
rJMSF009F03+          TCCAGCAAAATGGGCTGTCTTTCATATATAAATCTCATTTTCTTTCTTTACCTGCAGAGT
                      ____________________________________________________________
consensus             TCCAGCAAAATGGGCTGTCTTTCATATATAAATCTCATTTTCTTTCTTTACCTGCAGAGT
 
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rJMSF005M03+          ATATGTAATGGATTGCAATAACTAAGATAATTAGTGG                       
rJMSF030E14+          ATATGTAATGGATTGCAATAACTAAGATAATTAGTGGATTGCTTTACTCCCAAAATCAT 
rJMSF009F03+          ATATGTAATGGATTGCAATAACTAAGATAATTAGTGGATTGCTTTACTCCCAAAATCATT
                      ____________________________________________________________
consensus             ATATGTAATGGATTGCAATAACTAAGATAATTAGTGGATTGCTTTACTCCCAAAATCATT