Contig 004200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009E17Sequence420004200 (4)ref|XP_009778747.1|8e-40PREDICTED: uncharacterized protein At2g34160-like isoform X2 [Nicotiana sylvest676004200 (4)ref|XP_009626436.1|3e-63PREDICTED: uncharacterized protein At2g34160-like isoform X3 [Nicotiana tomento
JMSF010E17Sequence454004200 (4)ref|XP_009626436.1|1e-48PREDICTED: uncharacterized protein At2g34160-like isoform X3 [Nicotiana tomento613004200 (4)ref|XP_009626436.1|2e-56PREDICTED: uncharacterized protein At2g34160-like isoform X3 [Nicotiana tomento

Alignment

This contig is upended


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JMSF009E17-                                                      GATATAATCGCCCCCAT
JMSF010E17-                                                      GATATAATCGCCCCCAT
                      ____________________________________________________________
consensus                                                        GATATAATCGCCCCCAT
 
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JMSF009E17-           CCAAAGCTTCCAGCGTTGAACTGATGAAATTAGCAGAAGACATTTATTAATAGTGTAATT
JMSF010E17-           CCAAAGCTTCCAGCGTTGAACTGATGAAATTAGCAGAAGACATTTATTAATAGTGTAATT
rJMSF009E17+                                                      TATTAATAGNGTAATT
                      ____________________________________________________________
consensus             CCAAAGCTTCCAGCGTTGAACTGATGAAATTAGCAGAAGACATTTATTAATAGTGTAATT
 
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JMSF009E17-           ACTATAGTAATATCATCTAAAGATTTTCTGTTTTGGTAAATAAAAGCTTCGAGTAATTTA
JMSF010E17-           ACTATAGTAATATCATCTAAAGATTTTCTGTTTTGGTAAATAAAAGCTTCGAGTAATTTA
rJMSF010E17+           CTATAGTAATATCATCTAAAGATTTTCTGGTTTGGTAAATAAAAGCTTCGAGTAATTTA
rJMSF009E17+          ACTATAGTAATATCATCTAAAGATTTTCTGTTTTGGTAAATAAAAGCTTCGAGTAATTTA
                      ____________________________________________________________
consensus             ACTATAGTAATATCATCTAAAGATTTTCTGTTTTGGTAAATAAAAGCTTCGAGTAATTTA
 
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JMSF009E17-           GGGTTAGAGGTAGGGTGTTTGTTTTAATTGTGGAAGCAAATCAGGAATCATTAATGGAGG
JMSF010E17-           GGGTTAGAGGTAGGGTGTTTGTTTTAATTGTGGAAGCAAATCAGGAATCATTAATGGAGG
rJMSF010E17+          GGGTTAGAGGTAGGGTGTTTGTTTTAATTGNGGAAGCAAATCAGGAATCATTAATGGNGG
rJMSF009E17+          GGGTTAGAGGTAGGGTGTTTGTTTTAATTGTGGAAGCAAATCNGGAATCATTAATGGAGG
                      ____________________________________________________________
consensus             GGGTTAGAGGTAGGGTGTTTGTTTTAATTGTGGAAGCAAATCAGGAATCATTAATGGAGG
 
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JMSF009E17-           AGATAACGGAGGGAGTCACCAATATCAACATTAGCGCCGGTGATCTTCAGAAGAAGAATC
JMSF010E17-           AGATAACGGAGGGAGTCACCAATATCAACATTAGCGCCGGTGATCTTCAGAAGAAGAATC
rJMSF010E17+          AGATAACGGNGGGAGTCACCAATATCAACNTTAGCGCCGGTGATNTTCAGAAGAAGAATN
rJMSF009E17+          AGATAACGGAGGGAGTCNCCAATATCAACNTTAGCGCCGGTGATNTTCAGAAGAAGAATC
                      ____________________________________________________________
consensus             AGATAACGGAGGGAGTCACCAATATCAACATTAGCGCCGGTGATCTTCAGAAGAAGAATC
 
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JMSF009E17-           GCATTCAGGTCTCCAGCACCAAGAAACCATTGTTCTTCTATGTCAATCTTGCCAAGAGAT
JMSF010E17-           GCATTCAGGTCTCCAGCACCAAGAAACCATTGTTCTTCTATGTCAATCTTGCCAAGAGAT
rJMSF010E17+          GCATTCAGGTNTCCAGCNCCNAGAAACCNTTGTTNTTCTANGTCAATCTTGCCNAGAGAT
rJMSF009E17+          GCNTTCAGGTNTCCAGCNCCNAGAAACCNTTGTTNTTCTATGTCAATCTTGCCNAGAGAT
                      ____________________________________________________________
consensus             GCATTCAGGTCTCCAGCACCAAGAAACCATTGTTCTTCTATGTCAATCTTGCCAAGAGAT
 
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JMSF009E17-           ATATGCAGCAGTACAATGAGGTGGAGCTTTCTGCTCTTGGAATGGCTATTGCAACAGTAG
JMSF010E17-           ATATGCAGCAGTACAATGAGGTGGAGCTTTCTGCTCTTGGAATGGCTATTGCAACAGTAG
rJMSF010E17+          ATNTGCAGCNGTACAATGAGGNGGAGCTTTNTGCTCTTGGAATGGCTATTGCAACNGTAG
rJMSF009E17+          ATATGCAGCNGTACAATGAGGNGGAGCTTTNTGCTCTTGGAATGGCTATTGCAACNGTAG
                      ____________________________________________________________
consensus             ATATGCAGCAGTACAATGAGGTGGAGCTTTCTGCTCTTGGAATGGCTATTGCAACAGTAG
 
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JMSF009E17-           TCTCAGTGGCTGAAATCCTGAAGAACAATGGATTAGCTGTTGA                 
JMSF010E17-           TCTCAGTGGCTGAAATCCTGAAGAACAATGGATTAGCTGTTGAAAAGAAGATTATGACAT
rJMSF010E17+          TNTCAGNGGCTGAAATCCTGAAGAACAATGGATTAGCTGTTGAAAAGAAGATTATGACNT
rJMSF009E17+          TNTCAGTGGCTGAAATCCTGAAGAACAATGGATTAGCTGTTGAAAAGAAGATTATGACNT
                      ____________________________________________________________
consensus             TCTCAGTGGCTGAAATCCTGAAGAACAATGGATTAGCTGTTGAAAAGAAGATTATGACAT
 
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JMSF010E17-           CAACTGTTGATGTCAA                                            
rJMSF010E17+          CAACNGTTGATGTCAAGGATGATTCAAGAGGAAGGCCAATTTNTAAAGCCAAAATTGAGA
rJMSF009E17+          CAACTGTTGATGTCAAGGATGATTCAAGAGGAAGGCCAATTTCTAAAGCCAAAATTGAGA
                      ____________________________________________________________
consensus             CAACTGTTGATGTCAAGGATGATTCAAGAGGAAGGCCAATTTCTAAAGCCAAAATTGAGA
 
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rJMSF010E17+          TAGNGCTTGGGAAGAGTGAAAAATTTGNCGNGATAATGGCAGCTGCTTNTGAAAAGGACC
rJMSF009E17+          TAGTGCTTGGGAAGAGTGAAAAATTTGACGAGATAATGGCAGCTGCTTNTGAAAAGGACC
                      ____________________________________________________________
consensus             TAGTGCTTGGGAAGAGTGAAAAATTTGACGAGATAATGGCAGCTGCTTNTGAAAAGGACC
 
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rJMSF010E17+          GTGGTGATGGAGAAGNGCAAAGTTAATTCCNCCNTCNCNATCNTTGTTTTTTTTTTTCTT
rJMSF009E17+          GTGGTGATGGAGAAGTGCAAAGTTAATTCCCCCNTCNCNATCNTTGTTTTTTTTTTTCTT
                      ____________________________________________________________
consensus             GTGGTGATGGAGAAGTGCAAAGTTAATTCCCCCNTCNCNATCNTTGTTTTTTTTTTTCTT
 
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rJMSF010E17+          TGCTATTTATCTTTGAANAGNAGTTNAGGTTTTGGAGNTGGTGGTT              
rJMSF009E17+          TGCTATTTATCTTTGAATAGGAGTTGAGGTTTTGGAGTTGGTGGTTTTGCCAACATATGA
                      ____________________________________________________________
consensus             TGCTATTTATCTTTGAATAGGAGTTGAGGTTTTGGAGTTGGTGGTTTTGCCAACATATGA
 
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rJMSF009E17+          GAACATCTAGAATCCTAAGTNGGCTTGTTTAAGCAACAGAGGTTACTGTGTGAACAATCA
                      ____________________________________________________________
consensus             GAACATCTAGAATCCTAAGTNGGCTTGTTTAAGCAACAGAGGTTACTGTGTGAACAATCA