Contig 004194:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017C10Sequence618004194 (3)gb|ABK06410.1|2e-97flag-tagged protein kinase domain of putative mitogen-activated protein kinase
JMSF008G23Sequence269004194 (3)dbj|BAD94728.1|2e-53hypothetical protein [Arabidopsis thaliana]693004194 (3)gb|ABK06410.1|2e-111flag-tagged protein kinase domain of putative mitogen-activated protein kinase

Alignment

This contig is upended


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JMFS017C10+                                                                 GTTCCC
rJMSF008G23-                                     ACTTTTTTTTGAAAGAATACATATATGGTTCCC
                      ____________________________________________________________
consensus                                        ACTTTTTTTTGAAAGAATACATATATGGTTCCC
 
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JMFS017C10+           AAAAATGGCCATTGCTGGTTCCAAAGTGAAGAGCAAAAAAGGGGGAGGGGAGGAATTATA
rJMSF008G23-          AAAAATGGCCATTGCTGGTTCCAAAGTGAAGAGCAAAAAAGGGGGAGGGGAGGAATTATA
                      ____________________________________________________________
consensus             AAAAATGGCCATTGCTGGTTCCAAAGTGAAGAGCAAAAAAGGGGGAGGGGAGGAATTATA
 
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JMFS017C10+           TTATACCCAGAACCAGAACAACCAACGAATACATTACTACTCCACAACTGTTTAATAGTT
rJMSF008G23-          TTATACCCAGAACCAGAACAACCAACGAATACATTACTACTCCACAACTAGTTAATAGTT
                      ____________________________________________________________
consensus             TTATACCCAGAACCAGAACAACCAACGAATACATTACTACTCCACAACTGTTTAATAGTT
 
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JMFS017C10+           ATGATGTCTTGGGTGCTTTTGTCTGGGCGGCAGTGGACAATGACCGTAAATGACTTGCAA
rJMSF008G23-          ATGATGTCTTGGGTGCTTTTGTCTGGGCGGCAGTGGACAATGACCGTAAATGACTTGCAA
                      ____________________________________________________________
consensus             ATGATGTCTTGGGTGCTTTTGTCTGGGCGGCAGTGGACAATGACCGTAAATGACTTGCAA
 
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JMFS017C10+           TTTCTGTAAATGATGGCCTGGATGCGGGATTTGGAGCCCAACACTGCTCCATTAAGTTTC
rJMSF008G23-          TTTCTGTAAATGATGGCCTGGATGCGGGATTTGGAGCCCAACACTGCTCCATTAAGTTTC
                      ____________________________________________________________
consensus             TTTCTGTAAATGATGGCCTGGATGCGGGATTTGGAGCCCAACACTGCTCCATTAAGTTTC
 
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JMFS017C10+           TCCACTCTGGATCACAGTAACTTGGAATACTTGGCCTCAATGTGTTGCTCACTATGCCTC
rJMSF008G23-          TCCACTCTGGATCACAGTAACTTGGAATACTTGGCCTCAATGTGTTGCTCACTATGCCTC
                      ____________________________________________________________
consensus             TCCACTCTGGATCACAGTAACTTGGAATACTTGGCCTCAATGTGTTGCTCACTATGCCTC
 
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JMFS017C10+           CTATGATTGCACCGTAATGCATGTTGGCATAAGGCTCCTCTCCAGTGAGAATCTCCCATA
rJMSF008G23-          CTATGATTGCACCGTAATGCATGTTGGCATAAGGCTCCTCTCCAGTGAGAATCTCCCATA
                      ____________________________________________________________
consensus             CTATGATTGCACCGTAATGCATGTTGGCATAAGGCTCCTCTCCAGTGAGAATCTCCCATA
 
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JMFS017C10+           AGACAATACCAAAGGAGAACACATCAACTTTTTCAGAAACTTTATTGCTGCTACCATTTA
JMSF008G23+                                           TCAGAAACTTTATTGCTGCTACCATTTA
rJMSF008G23-          AGACAATACCAAAGGAGAACACATCAACTTTTTCAGAAACTTTATTGCTGCTACCATTTA
                      ____________________________________________________________
consensus             AGACAATACCAAAGGAGAACACATCAACTTTTTCAGAAACTTTATTGCTGCTACCATTTA
 
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JMFS017C10+           ACAGTTCAGGAGCCATCCATGGAAGTGTCCCCCTAACTCCACCAGAGACCAAGGTGTTCC
JMSF008G23+           ACAGTTCAGGAGCCATCCATGGAAGTGTCCCCCTAACTCCACCAGAGACCAAGGTGTTCC
rJMSF008G23-          ACAGTTCAGGAGCCATCCATGGAAGTGTCCCCCTAACTCCACCAGAGACCAAGGTGTTCC
                      ____________________________________________________________
consensus             ACAGTTCAGGAGCCATCCATGGAAGTGTCCCCCTAACTCCACCAGAGACCAAGGTGTTCC
 
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JMFS017C10+           GTTTTATCTTTGACAAACCAAAATCACCAACCTTGCATATAGGTCGCGAAGGATCTTTCA
JMSF008G23+           GTTTTATCTTTGACAAACCAAAATCACCAACCTTGCATATAGGTCGCGAAGGATCTTTCA
rJMSF008G23-          GTTTTATCTTTGACAAACCAAAATCACCAACCTTGCATATAGGTCGCGAAGGATCTTTCA
                      ____________________________________________________________
consensus             GTTTTATCTTTGACAAACCAAAATCACCAACCTTGCATATAGGTCGCGAAGGATCTTTCA
 
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JMFS017C10+           AGTTCACCAGTAAATTGTCACATTTCAGGTCGAAATGCACAATATTTTTTGAATGCAAGT
JMSF008G23+           AGTTCACCAGTAAATTGTCACATTTCAGGTCGAAATGCACAATATTTTTTGAATGCAAGT
rJMSF008G23-          AGTTCACCAGTAAATTGTCACATTTCAGGTCGAAATGCACAATATTTTTTGAATGCAAGT
                      ____________________________________________________________
consensus             AGTTCACCAGTAAATTGTCACATTTCAGGTCGAAATGCACAATATTTTTTGAATGCAAGT
 
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JMFS017C10+           A                                                           
JMSF008G23+           ATTCCATCCCAAATGCTGCATC                                      
rJMSF008G23-          ATTCCATCCCAAATGCTGCATCCATAGCTATTATGAGCCGTTTTCGCCGATCAAGGTACC
                      ____________________________________________________________
consensus             ATTCCATCCCAAATGCTGCATCCATAGCTATTATGAGCCGTTTTCGCCGATCAAGGTACC