Contig 004184:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF014E06+                                                                ACAAGG
                      ____________________________________________________________
consensus                                                                   ACAAGG
 
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rJMSF014E06+          GGTGAATGGGTTTGGACATAAAGTAACGGCAACTTGGAAAGTTACGATGAGAGGAATGTG
                      ____________________________________________________________
consensus             GGTGAATGGGTTTGGACATAAAGTAACGGCAACTTGGAAAGTTACGATGAGAGGAATGTG
 
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rJMSF014E06+          ACTTGGTGATGGATTCACTATCATCTACTGTCAGATCGGGANGAAGTCGAGCCTNTCCCA
                      ____________________________________________________________
consensus             ACTTGGTGATGGATTCACTATCATCTACTGTCAGATCGGGANGAAGTCGAGCCTNTCCCA
 
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rJMSF014E06+          TCCCTAGCAGTCGATGTTCCCTCCATTGTTGNTGAGAAGGATAAAGGCCTCAAAACTTGC
                      ____________________________________________________________
consensus             TCCCTAGCAGTCGATGTTCCCTCCATTGTTGNTGAGAAGGATAAAGGCCTCAAAACTTGC
 
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rJMSF014E06+          CTAGAAGTGCCATAATCATCAATGCTGATTTCTTGTATAGCAGGAGGAGTCCACTGCTGA
                      ____________________________________________________________
consensus             CTAGAAGTGCCATAATCATCAATGCTGATTTCTTGTATAGCAGGAGGAGTCCACTGCTGA
 
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rJMSF014E06+          GCAGGAGAGTTATCAGATGGGNTANTATAGTATGCACCAATACCATCAGATACAAGATAT
                      ____________________________________________________________
consensus             GCAGGAGAGTTATCAGATGGGNTANTATAGTATGCACCAATACCATCAGATACAAGATAT
 
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rJMSF014E06+          TGATGATTCGTGAACNGGTTTCCCCTNGCCCAGCTTNTACTTTNTGTGCTGTTTGATGAA
rJMSF037M01+                                                               TGATGAA
rJMSF004L16+                                     GCCCAGCTTCTACTTTCTCTGCTGTTTGATGAA
                      ____________________________________________________________
consensus             TGATGATTCGTGAACNGGTTTCCCCTNGCCCAGCTTCTACTTTCTGTGCTGTTTGATGAA
 
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rJMSF014E06+          GNTGATGATCCATACAATTGGGCTCCATCATGAGACCCAANTGATAGAGCTTCAGATTGG
rJMSF037M01+          GNTGATGATCCATACAATTGGGNTCCATCATGAGANCCAAATGATAGAGCTTCAGATNGG
rJMSF004L16+          GCTGATGATCCATACAATTGGGCTCCATCATGAGACCCAAATGATAGAGCTTCAGATTGG
                      ____________________________________________________________
consensus             GCTGATGATCCATACAATTGGGCTCCATCATGAGACCCAAATGATAGAGCTTCAGATTGG
 
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rJMSF014E06+          AACCGGAAGTCCCATCTTGTTGNTGGCGGGGAAAAGCTCGAATTAGTTCGCCAGTAAGGC
rJMSF037M01+          AACCGGAAGTNCCATNTTGTTGGTGGNGGGGAAAAGCTNGAATTAGTTCGCCAGTAAGGC
rJMSF004L16+          AACCGGAAGTCCCATCTTGTTGGTGGCGGGGAAAAGCTCGAATTAGTTCGCCAGTAAGGC
                      ____________________________________________________________
consensus             AACCGGAAGTCCCATCTTGTTGGTGGCGGGGAAAAGCTCGAATTAGTTCGCCAGTAAGGC
 
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rJMSF014E06+          TCATGTGGCCCCATGGACCACTCCCTGNNGGTTGCATTTGATCCATGTGGCCNNGCAGCC
rJMSF037M01+          TCATGTGGCCCCATGGACCACTCCCTGCTGGTNGCATTCGATCCATGTGGCNTTGCAGCC
rJMSF004L16+          TCATGTGGCCCCATGGACCACTCCCTGCTGGTTGCATTTGATCCATGTGGCCTTGCAGCC
                      ____________________________________________________________
consensus             TCATGTGGCCCCATGGACCACTCCCTGCTGGTTGCATTTGATCCATGTGGCCTTGCAGCC
 
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rJMSF014E06+          ACACAACAAAGGGACCCCGTNTTAGCTATGTTTCGGAAGACTCACAAATATTATATTATG
rJMSF037M01+          ACACAACAAAGGGACCCCGTTTTAGCTATGTTTCGGAAGACTCACAAATATTATATTATG
rJMSF028M02+                                      TGTTTCGGAAGACTCACAANTANTATATTATG
rJMSF004L16+          ACACAACAAAGGGACCCCGTTTTAGCTATGTTTCGGAAGACTCACAAATATTATATTATG
                      ____________________________________________________________
consensus             ACACAACAAAGGGACCCCGTTTTAGCTATGTTTCGGAAGACTCACAAATATTATATTATG
 
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rJMSF014E06+          TTTGCTTCTACAATCACTTTGCAGCTCAAAGCGGGTCAGGATGGAACTCCACTAACTACT
rJMSF037M01+          TTNGCTTNTACAATCACTNTGCAGCTCAAA-CGGGTCAGGATGGAACTCCACTAACTACT
rJMSF028M02+          TTTGCTTCTACAATCACNNTGCAGCTCAAA-CGGGTCAGGATGGAACTCCANTAACTACT
rJMSF004L16+          TTTGCTTCTACAATCACTTTGCAGCTCAAA-CGGGTCAGGATGGAACTCCACTAACTACT
                      ____________________________________________________________
consensus             TTTGCTTCTACAATCACTTTGCAGCTCAAA-CGGGTCAGGATGGAACTCCACTAACTACT
 
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rJMSF014E06+          CCAGTTT-CTTGGGCATCAACATTCTAAGCCANCACAAGAGCTTCATCT           
rJMSF037M01+          CCAGTTT-CTTGGGCATCAACATTCTAAGCCATCACAAGAGCTTCATCT           
rJMSF028M02+          CCAGTTTCCTTGGGCATCAACATTCTAAGCCATCACAAGAGCTTCATCT           
rJMSF004L16+          CCAGTTT-CTTGGGCATCAACATTCTAAGCCATCACAAGAGCTTCATCTCCTATCCTTAA
                      ____________________________________________________________
consensus             CCAGTTT-CTTGGGCATCAACATTCTAAGCCATCACAAGAGCTTCATCTCCTATCCTTAA