Contig 004182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN025I05Sequence540004182 (2)ref|XP_009793769.1|2e-30PREDICTED: auxin-responsive protein IAA27-like [Nicotiana sylvestris]
JMSF003L21Sequence260013118 (2)738004182 (2)ref|XP_010254653.1|6e-80PREDICTED: auxin-responsive protein IAA9-like [Nelumbo nucifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           GAGAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXGACAGTAATGGATGGATGAAGATTGG
                      ____________________________________________________________
consensus             GAGAACTAGTCTCGAGNNNNNNNNNNNNNNNNNNGACAGTAATGGATGGATGAAGATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           AGTTAAGAATCAAACTTCATACAATCTTGGCAGTCTAGTACAAAGCAACTATTTAATTAA
rJMSF003L21-                                                    AAGCAACTATTTAATTAA
                      ____________________________________________________________
consensus             AGTTAAGAATCAAACTTCATACAATCTTGGCAGTCTAGTACAAAGCAACTATTTAATTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           GTTTGCATTAACAACTTGAGTTGAAAGTTACATCTTCAGAGTACACAACTATGTTACTGC
rJMSF003L21-          GTTTGCATTAACAACTTGAGTTGAAAGTTACATCTTCAGAGTACACAACTATGTTACTGC
                      ____________________________________________________________
consensus             GTTTGCATTAACAACTTGAGTTGAAAGTTACATCTTCAGAGTACACAACTATGTTACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           TATATCTTCTTGATCACAGTAGTTGTTCCATTCTTTGGATGTTACACCTAATCAAACTAC
rJMSF003L21-          TATATCTTCTTGATCACAGTAGTTGTTCCATTCTTTGGATGTTACACCTAATCAAACCAC
                      ____________________________________________________________
consensus             TATATCTTCTTGATCACAGTAGTTGTTCCATTCTTTGGATGTTACACCTAATCAAACTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           AAAACTAGAAGGAATATCCTATACTGTGCACAGTATCTCTGGATTCTCCTTGCAGGAGAT
rJMSF003L21-          AAAACTAGAAGGAATATCCTATACTGTGCACAGTATCTCTGGATTCTCCTTGCAGGAGAT
                      ____________________________________________________________
consensus             AAAACTAGAAGGAATATCCTATACTGTGCACAGTATCTCTGGATTCTCCTTGCAGGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           TCCCTGCATCACTTCTCGATCTTGAATTTCTGTGCAGCCCTCGGTGCTAGACCAATGGCA
rJMSF003L21-          TCCCTGCATCACTTCTCGATCTTGAATTTCTGTGCAGCCCTCGGTGCTAGACCAATGGCA
                      ____________________________________________________________
consensus             TCCCTGCATCACTTCTCGATCTTGAATTTCTGTGCAGCCCTCGGTGCTAGACCAATGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           TCTGCACTTTTCATGATTCGTAATTTCTTGCATGACTCGGTGAACATCTCCCATGGGATA
rJMSF003L21-          TCTGCACTTTTCATGATTCGTAATTTCTTGCATGACTCGGTGAACATCTCCCATGGGACA
                      ____________________________________________________________
consensus             TCTGCACTTTTCATGATTCGTAATTTCTTGCATGACTCGGTGAACATCTCCCATGGGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           TCACCAACAAGCATCCAGTCACCATCCTTGTCTTCGTAAGTTAGCACATACTCTGACCCA
rJMSF003L21-          TCACCAACAAGCATCCAGTCACCATCCTTGTCTTCGTAAGTTAGCACATACTCTGACCCA
                      ____________________________________________________________
consensus             TCACCAACAAGCATCCAGTCACCATCCTTGTCTTCGTAAGTTAGCACATACTCTGACCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025I05+           CTTGTGAGATCAATTAAGTTGGTTTCATCGAGCTTCTTTCGTCCAGGGAATCCATCAGAA
rJMSF003L21-          CTTGTGAGATCAATTAAGTTGGTTTCATCGAGCTTCTTTCGTCCAGGGAATCCATCAGAA
                      ____________________________________________________________
consensus             CTTGTGAGATCAATTAAGTTGGTTTCATCGAGCTTCTTTCGTCCAGGGAATCCATCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L21-          CTGCATTGTCCTGTTTTGTAAACGAGGGGGAGAGTCATACCAACTGTGAAACACCCGAAC
                      ____________________________________________________________
consensus             CTGCATTGTCCTGTTTTGTAAACGAGGGGGAGAGTCATACCAACTGTGAAACACCCGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L21-          ATCTTCTGGAGAGCTGATGAGAGCTCCGAATAATTAGCGTAGCTTTTAAGATCTACCTTT
                      ____________________________________________________________
consensus             ATCTTCTGGAGAGCTGATGAGAGCTCCGAATAATTAGCGTAGCTTTTAAGATCTACCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L21-          CTTAGATATGGAGCTCCTTCCAAGCTAACTTTGACAAAAATGCAACCAGGTCCCGGTTTC
                      ____________________________________________________________
consensus             CTTAGATATGGAGCTCCTTCCAAGCTAACTTTGACAAAAATGCAACCAGGTCCCGGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L21-          GCCTCAACGTCGTTGTTTTTCTTTACGTTGGAGGCAAGGGTGTTCTTGCGAAATGATCTA
                      ____________________________________________________________
consensus             GCCTCAACGTCGTTGTTTTTCTTTACGTTGGAGGCAAGGGTGTTCTTGCGAAATGATCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L21-          ACAGGTGGCCATCCAACTACTTGCGCCTTTGGGGCAGGAGCACCAACATTCTCATTTATA
                      ____________________________________________________________
consensus             ACAGGTGGCCATCCAACTACTTGCGCCTTTGGGGCAGGAGCACCAACATTCTCATTTATA