Contig 004176:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028C13Sequence517012902 (2)emb|CDP01262.1|5e-56unnamed protein product [Coffea canephora]682004176 (2)ref|XP_008220386.1|1e-45PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Prunus mume]
JMFF051M06Sequence615012902 (2)emb|CDP01262.1|1e-77unnamed protein product [Coffea canephora]565004176 (2)ref|XP_008220386.1|5e-30PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Prunus mume]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+                                    TGGTCGATCCGTTGCAGGTGAGAGAGGAACAGCG
                      ____________________________________________________________
consensus                                       TGGTCGATCCGTTGCAGGTGAGAGAGGAACAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          GAGCTCNGAGAGCAACATGTGGCTGCTGCCGTCGCCGGCGGTGTTCGGCGGCACAAAACC
                      ____________________________________________________________
consensus             GAGCTCNGAGAGCAACATGTGGCTGCTGCCGTCGCCGGCGGTGTTCGGCGGCACAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          GCTTNGTCGTCACGCCGCACGCCGAGTACACGGCGGATGACATCTCCCGGTTTCTGGCGG
                      ____________________________________________________________
consensus             GCTTNGTCGTCACGCCGCACGCCGAGTACACGGCGGATGACATCTCCCGGTTTCTGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          ACATTGGGTTCTCCGGCGGCGTCTCGCGCTACGAATCGCGCGTGTTGCCTCTGGTGGAGC
rJMFF051M06+                                             TCGCGCGTGTTGCCTCTGGTGGAGC
                      ____________________________________________________________
consensus             ACATTGGGTTCTCCGGCGGCGTCTCGCGCTACGAATCGCGCGTGTTGCCTCTGGTGGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          GGTTGGCCGCGCCGCCGGGAGTGCCGGTGACGTGCATATTCGGGAGCGGGGTTGAGACGG
rJMFF051M06+          GGTTGGCCGCGCCGCCGGGAGTGCCGGTGACGTGCATATTCGGGAGCGGGGTTGAGACGG
                      ____________________________________________________________
consensus             GGTTGGCCGCGCCGCCGGGAGTGCCGGTGACGTGCATATTCGGGAGCGGGGTTGAGACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          CGGAGACGCTGGTTTATGGGGAGGGTGGGTTCGATGAGCAGCCGTAGATTGTGTACGGCG
rJMFF051M06+          CGGAGACGCTGGTTTATGGGGAGGGTGGGTTCGATGAGCAGCCGTAGATTGTGTACGGCG
                      ____________________________________________________________
consensus             CGGAGACGCTGGTTTATGGGGAGGGTGGGTTCGATGAGCAGCCGTAGATTGTGTACGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          ACGGCGACGGCACGGTGAATATGGTGAGCTTGACGGCACTTGAGTGGCAATGGGGAAATG
rJMFF051M06+          ACGGCGACGGCACGGTGAATATGGTGAGCTTGACGGCACTTGAGTGGCAATGGGGAAATG
                      ____________________________________________________________
consensus             ACGGCGACGGCACGGTGAATATGGTGAGCTTGACGGCACTTGAGTGGCAATGGGGAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          ATACGGTTGAAGTGATCAAGATTCCTGGGGTTTCTCATATGTCAATGGTTAAAGATAAAG
rJMFF051M06+          ATACGGTTGAAGTGATCAAGATTCCTGGGGTTTCTCATATGTCAATGGTTAAAGATAAAG
                      ____________________________________________________________
consensus             ATACGGTTGAAGTGATCAAGATTCCTGGGGTTTCTCATATGTCAATGGTTAAAGATAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          GTGCAGTTGATAGAATTCTTGAAGAAATTTCTTCAATCAATTCTAATATTACTACTTCTA
rJMFF051M06+          GTGCAGTTGATAGAATTCTTGAAGAAATTTCTTCAATCAATTCTAATATTACTACTTCTA
                      ____________________________________________________________
consensus             GTGCAGTTGATAGAATTCTTGAAGAAATTTCTTCAATCAATTCTAATATTACTACTTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          GCACCCTCGTTTCAACAAGTTGATTGTAAGTTGTTCCAATGACTTATTAATTATGTATTA
rJMFF051M06+          GCACCCTCGTTTCAACAAGTTGATTGTAAGTTGTTCCAATGACTTATTAATTATGTATTA
                      ____________________________________________________________
consensus             GCACCCTCGTTTCAACAAGTTGATTGTAAGTTGTTCCAATGACTTATTAATTATGTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          ATTTAGAATTTTAATTTGGTACTAGAGTTAGATATTTCATACTAGTATAAAGTACATGAC
rJMFF051M06+          ATTTAGAATTTTAATTTGGTACTAGAGTTAGATATTTCATACTAGTATAAAGTACATGAC
                      ____________________________________________________________
consensus             ATTTAGAATTTTAATTTGGTACTAGAGTTAGATATTTCATACTAGTATAAAGTACATGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028C13+          ACAATTTCGTTTAATATACTATCCTATTACGGGATAAAAGCTAAGAGT            
rJMFF051M06+          ACAATTTCGTTTAATATACTATCCTATTACGGGATAAAAGCTAAGAGTGTTCTCATATAA
                      ____________________________________________________________
consensus             ACAATTTCGTTTAATATACTATCCTATTACGGGATAAAAGCTAAGAGTGTTCTCATATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051M06+          GGGATTATGTTCATTATXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             GGGATTATGTTCATTATNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG