| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014I20 | Sequence | 551 | 004175 (6) | ref|XP_011095434.1| | 4e-29 | PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum] | |||||
| JMFF032O20 | Sequence | 572 | 006400 (4) | emb|CDP13803.1| | 5e-100 | unnamed protein product [Coffea canephora] | 704 | 004175 (6) | ref|XP_011095434.1| | 4e-54 | PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum] |
| JMFF051L14 | Sequence | 622 | 006400 (4) | emb|CDP13803.1| | 3e-96 | unnamed protein product [Coffea canephora] | 585 | 004175 (6) | |||
| JMSF008B24 | Sequence | 276 | 006400 (4) | emb|CDP13803.1| | 1e-09 | unnamed protein product [Coffea canephora] | 753 | 004175 (6) | ref|XP_011095434.1| | 3e-81 | PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum] |
| JMSF009B24 | Sequence | 110 | 000842 (2) | 269 | 004175 (6) | ref|XP_011095434.1| | 2e-09 | PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum] | |||
| JMSF033O05 | Sequence | 672 | 006400 (4) | emb|CDP13803.1| | 2e-107 | unnamed protein product [Coffea canephora] | 648 | 004175 (6) | ref|XP_011095434.1| | 2e-53 | PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF008B24+ GAGATGGGGAGTGAACTGT
____________________________________________________________
consensus GAGATGGGGAGTGAACTGT
. : . : . : . : . : . :
rJMSF008B24+ CAAAAACAGTTGCGACATTCATTGTGCAAAAGATCCTTCTAGATGATATGGGCCTTGATT
____________________________________________________________
consensus CAAAAACAGTTGCGACATTCATTGTGCAAAAGATCCTTCTAGATGATATGGGCCTTGATT
. : . : . : . : . : . :
rJMSF008B24+ ATATATGTACCACAGCGGAGCGGTTCTTTGCCGTAGGCCGGGTGCTGGGAAATATGGTGA
rJMSF033O05+ CCGTAGGCCGGGTGCTGGGAAATATGGTGA
rJMFF032O20+ CCGTAGGCCGGGTGCTGGGAAATATGGTGA
____________________________________________________________
consensus ATATATGTACCACAGCGGAGCGGTTCTTTGCCGTAGGCCGGGTGCTGGGAAATATGGTGA
. : . : . : . : . : . :
rJMSF008B24+ CTGCCCTTGCTGAGCAGCCTTCATCTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
rJMSF033O05+ CTGCCCTTGCTGAGCAGCCTTCATCTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
rJMFF032O20+ CTGCCCTTGCTGAGCAGCCTTCATNTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
____________________________________________________________
consensus CTGCCCTTGCTGAGCAGCCTTCATCTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
. : . : . : . : . : . :
rJMSF008B24+ GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
rJMFF014I20+ TGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
rJMSF033O05+ GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
rJMFF032O20+ GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
____________________________________________________________
consensus GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
. : . : . : . : . : . :
rJMSF008B24+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
rJMFF014I20+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
rJMSF009B24+ TCGGAGGTGGNTAC
rJMSF033O05+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
rJMFF032O20+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
____________________________________________________________
consensus GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
. : . : . : . : . : . :
rJMSF008B24+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMFF014I20+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCNTACAAGCAGGGGGAGGATTTG
rJMSF009B24+ AACAGTTACTTCACAACGTGCAANNTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMSF033O05+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMFF032O20+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMFF051L14+ CAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
____________________________________________________________
consensus AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
. : . : . : . : . : . :
rJMSF008B24+ ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
rJMFF014I20+ ATCATATGATAGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
rJMSF009B24+ ATCATATGATGGNGAACTAAATTGACAAGATTCTNCCTNGNGAATTCAACATCTGTGATT
rJMSF033O05+ ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
rJMFF032O20+ ATCATATGATGGTGAACTAAATTGACAAGATTNTACCTCGTGAATTCAACATCTGTGATT
rJMFF051L14+ ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
____________________________________________________________
consensus ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
. : . : . : . : . : . :
rJMSF008B24+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMFF014I20+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMSF009B24+ GTGAAGTGACNCGANTCCAGAAANCCCGCNGAGTCAANACAATATTTATTCTTTNNNTGC
rJMSF033O05+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMFF032O20+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMFF051L14+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
____________________________________________________________
consensus GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
. : . : . : . : . : . :
rJMSF008B24+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMFF014I20+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMSF009B24+ NNNCGANNGATGATGGAANTGGATAGCCAAGTGTGGAATGTGCAGTGACTTNCATGGTGG
rJMSF033O05+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMFF032O20+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMFF051L14+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
____________________________________________________________
consensus TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
. : . : . : . : . : . :
rJMSF008B24+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
rJMFF014I20+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGNT
rJMSF009B24+ CAGTGTGGAAAAA
rJMSF033O05+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
rJMFF032O20+ CAGTGTGGAAAAATGTCGGATACTGTAGTTAGTAGTCTGATGATCCTGTTGTTATGTGCT
rJMFF051L14+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
____________________________________________________________
consensus CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
. : . : . : . : . : . :
rJMSF008B24+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
rJMFF014I20+ GNTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTNTCCGTAGA
rJMSF033O05+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
rJMFF032O20+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
rJMFF051L14+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
____________________________________________________________
consensus GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
. : . : . : . : . : . :
rJMSF008B24+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGTCCAGTCTGTTATATACGTCGTGTGGA
rJMFF014I20+ TTAGCCATACGAAGNTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
rJMSF033O05+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
rJMFF032O20+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
rJMFF051L14+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
____________________________________________________________
consensus TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
. : . : . : . : . : . :
rJMSF008B24+ ATTTTTTTTT
rJMFF014I20+ ANTTTTTTTT
rJMSF033O05+ ATTTTTTTTT
rJMFF032O20+ ATTTTTTTTTTATTTTTTTTGTATTTTCTCCCTTAGAACTCAAGTAAATAGGATGAATCT
rJMFF051L14+ A-TTTTTTTTTATTTTTTTTGTATTTTCTCCCTTAGAACTCAAGTAAATAGGATGAATCT
____________________________________________________________
consensus ATTTTTTTTTTATTTTTTTTGTATTTTCTCCCTTAGAACTCAAGTAAATAGGATGAATCT
. : . : . : . : . : . :
rJMFF032O20+ TACCATCATCA
rJMFF051L14+ TACCATCATCATGTTCTCATGCTCACCTTTAATTATGTAAGAGTCTTTCATAGTAAAACA
____________________________________________________________
consensus TACCATCATCATGTTCTCATGCTCACCTTTAATTATGTAAGAGTCTTTCATAGTAAAACA
. : . : . : . : . : . :
rJMFF051L14+ CATTGCATATTTAGTCAAATAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus CATTGCATATTTAGTCAAATAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG