Contig 004174:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-            GACTGTACTGTGTGAGTGAGGAGTGAGTAGTATCCCTATCCCCGCAAATCACCCACGCA
                      ____________________________________________________________
consensus              GACTGTACTGTGTGAGTGAGGAGTGAGTAGTATCCCTATCCCCGCAAATCACCCACGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           CTCACACTCTCGTCTCTTTCTTCAAAACCCTAAAGCCAACAGCAGTAATGGGAGAAGGAA
                      ____________________________________________________________
consensus             CTCACACTCTCGTCTCTTTCTTCAAAACCCTAAAGCCAACAGCAGTAATGGGAGAAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           AGGGATCGTCCCTCGTTCATTTGCTGGCCATTGTGTTGAGCTTGACCGCCTTCGGATTCG
rJMSF040F22+                                            GTTGAGCTTGACCGCCTTCGGATTCG
                      ____________________________________________________________
consensus             AGGGATCGTCCCTCGTTCATTTGCTGGCCATTGTGTTGAGCTTGACCGCCTTCGGATTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           CCATTGCCGCCGAGCGCCGCCGTAGCACTGGTACTCTGCATGACGATACCACATCCAATC
rJMSF040F22+          CCATTGCCGCCGAGCGCCGCCGTAGCACTGGTACTCTGCATGACGATACCACATCCAATC
rJMFF051K21+                                               GCATGACGATACCACATCCAATC
                      ____________________________________________________________
consensus             CCATTGCCGCCGAGCGCCGCCGTAGCACTGGTACTCTGCATGACGATACCACATCCAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           GTACATACTGTGTTTATAGTTCTGATGTTGCCACTGGATATGGGGTGGGTGCTTTCCTCT
rJMSF040F22+          GTACATACTGTGTTTATAGTTCTGATGTTGCCACTGGATATGGGGTGGGTGCTTTCCTCT
rJMFF051K21+          GTACATACTGTGTTTATAGTTCTGATGTTGCCACTGGATATGGGGTGGGTGCTTTCCTCT
                      ____________________________________________________________
consensus             GTACATACTGTGTTTATAGTTCTGATGTTGCCACTGGATATGGGGTGGGTGCTTTCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           TTCTTCTCTCAAGTGAGTCATTGGTAATGGGTGTGACAAAGTGCATGTGTTTTGGAAGAC
rJMSF040F22+          TTCTTCTCTCAAGTGAGTCATTGGTAATGGGTGTGACAAAGTGCATGTGTTTTGGAAGAC
rJMFF051K21+          TTCTTCTCTCAAGTGAGTCATTGGTAATGGGTGTGACAAAGTGCATGTGTTTTGGAAGAC
                      ____________________________________________________________
consensus             TTCTTCTCTCAAGTGAGTCATTGGTAATGGGTGTGACAAAGTGCATGTGTTTTGGAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           CTTTATCTCCTGGTGGAAATCGTGCCTGGACAATTATTTATTTTATTTCTTCATGGCTGA
rJMSF040F22+          CTTTATCTCCTGGTGGAAATCGTGCCTGGACAATTATTTATTTTATTTCTTCATGGCTGA
rJMFF051K21+          CTTTATCTCCTGGTGGAAATCGTGCCTGGACAATTATTTATTTTATTTCTTCATGGCTGA
                      ____________________________________________________________
consensus             CTTTATCTCCTGGTGGAAATCGTGCCTGGACAATTATTTATTTTATTTCTTCATGGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           GTTTTGTGGTGGCAGAAGCATGTCTTGTTGCTGGTGCTAAGAAAAATGCTTATCACACCA
rJMSF040F22+          GTTTTGTGGTGGCAGAAGCATGTCTTGTTGCTGGTGCTAAGAAAAATGCTTATCACACCA
rJMFF051K21+          GTTTTGTGGTGGCAGAAGCATGTCTTGTTGCTGGTGCTAAGAAAAATGCTTATCACACCA
                      ____________________________________________________________
consensus             GTTTTGTGGTGGCAGAAGCATGTCTTGTTGCTGGTGCTAAGAAAAATGCTTATCACACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           AGTATCGAGATATGATATTGGCAGAAAATTTTTCTTGTGAAACACTTCGGAAAGGTGTAT
rJMSF040F22+          AGTATCGAGATATGATATTGGCAGAAAATTTTTCTTGTGAAACACTTCGGAAAGGTGTAT
rJMFF051K21+          AGTATCGAGATATGATATTGGCAGAAAATTTTTCTTGTGAAACACTTCGGAAAGGTGTAT
                      ____________________________________________________________
consensus             AGTATCGAGATATGATATTGGCAGAAAATTTTTCTTGTGAAACACTTCGGAAAGGTGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           TCGTTGCTGGAGCTGTCTTTGTGGTAGC-ACAATGATCATNCACGTGTACTATTACATGT
rJMSF040F22+          TCGTTGCTGGAGCTGTCTTTGTGGTAGCAACAATGATCATCAACGTGTACTATTACATGT
rJMFF051K21+          TCGTTGCTGGAGCTGTCTTTGTGGTAGCAACAATGATCATCAACGTGTACTATTACATGT
                      ____________________________________________________________
consensus             TCGTTGCTGGAGCTGTCTTTGTGGTAGCAACAATGATCATCAACGTGTACTATTACATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K21-           ATTTCACTAA                                                  
rJMSF040F22+          ATTTCACTAAGGCTACTACTCAACCAGCTCACAAAGCAAACCGTAATAGCTCAAATGTGG
rJMFF051K21+          ATTTCACTAAGGCTACTACTCAACCAGCTCACAAAGCAAACCGTAATAGCTCAAATGTGG
                      ____________________________________________________________
consensus             ATTTCACTAAGGCTACTACTCAACCAGCTCACAAAGCAAACCGTAATAGCTCAAATGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F22+          GCATGACTGGCTTTGCATAAATGTATTTTGAGACTAGTCTTGTCTTGCTCTATATATGGT
rJMFF051K21+          GCATGACTGGCTTTGCATAAATGTATTTTGAGACTAGTCTTGTCTTGCTCTATATATGGT
                      ____________________________________________________________
consensus             GCATGACTGGCTTTGCATAAATGTATTTTGAGACTAGTCTTGTCTTGCTCTATATATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F22+          GTAA                                                        
rJMFF051K21+          GTAAGGTATCACTATGGATGGATATATTGTACAATTGAAATAGTTTGACATTAACATGTT
                      ____________________________________________________________
consensus             GTAAGGTATCACTATGGATGGATATATTGTACAATTGAAATAGTTTGACATTAACATGTT