Contig 004167:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050M03Sequence631012184 (6)ref|XP_006359849.1|2e-46PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]571004167 (5)ref|XP_004247413.1|4e-46PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF022J21Sequence639012184 (6)ref|XP_006359849.1|5e-78PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]778004167 (5)ref|XP_009770640.1|3e-102PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF034F10Sequence689012184 (6)ref|XP_006359849.1|7e-59PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]739004167 (5)ref|XP_009770640.1|8e-94PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF047K23Sequence693012184 (6)ref|XP_006359849.1|5e-60PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]711004167 (5)ref|XP_009770640.1|9e-98PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF049D19Sequence693012184 (6)ref|XP_006359849.1|2e-60PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]781004167 (5)ref|XP_009770640.1|4e-101PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047K23+ GTTAGGAAGACCATTGA
rJMSF022J21+ AAAAGTTCAGAACTTGGAGGTTAGGAAGACCATTGA
rJMSF049D19+ GGTTAAGGAAAAGTTCAGAACTTGGAGGTTAGGAAGACCATTGA
rJMSF034F10+ GA
                      ____________________________________________________________
consensus GGTTAAGGAAAAGTTCAGAACTTGGAGGTTAGGAAGACCATTGA
 
. : . : . : . : . : . :
rJMSF047K23+ AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
rJMSF022J21+ AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
rJMSF049D19+ AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
rJMSF034F10+ AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
                      ____________________________________________________________
consensus AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
 
. : . : . : . : . : . :
rJMSF047K23+ ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
rJMSF022J21+ ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
rJMSF049D19+ ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
rJMSF034F10+ ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
                      ____________________________________________________________
consensus ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
 
. : . : . : . : . : . :
rJMSF047K23+ TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
rJMSF022J21+ TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
rJMSF049D19+ TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
rJMSF034F10+ TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
                      ____________________________________________________________
consensus TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
 
. : . : . : . : . : . :
rJMSF047K23+ AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMSF022J21+ AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMSF049D19+ AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMSF034F10+ AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMFF050M03+ GAAACAAGACTGGTGGAAACGATAGCATATA
                      ____________________________________________________________
consensus AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
 
. : . : . : . : . : . :
rJMSF047K23+ CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMSF022J21+ CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMSF049D19+ CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMSF034F10+ CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMFF050M03+ CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
                      ____________________________________________________________
consensus CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
 
. : . : . : . : . : . :
rJMSF047K23+ GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMSF022J21+ GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMSF049D19+ GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMSF034F10+ GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMFF050M03+ GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAGGAAAATTTCCTGTTGCCTCTAAAGT
                      ____________________________________________________________
consensus GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
 
. : . : . : . : . : . :
rJMSF047K23+ GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMSF022J21+ GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMSF049D19+ GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMSF034F10+ GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMFF050M03+ GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
                      ____________________________________________________________
consensus GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
 
. : . : . : . : . : . :
rJMSF047K23+ AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMSF022J21+ AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMSF049D19+ AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMSF034F10+ AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMFF050M03+ AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
                      ____________________________________________________________
consensus AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
 
. : . : . : . : . : . :
rJMSF047K23+ AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMSF022J21+ AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMSF049D19+ AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMSF034F10+ AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMFF050M03+ AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
                      ____________________________________________________________
consensus AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
 
. : . : . : . : . : . :
rJMSF047K23+ ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMSF022J21+ ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMSF049D19+ ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMSF034F10+ ACTTCACCTCGTATCTTCGTTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMFF050M03+ ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
                      ____________________________________________________________
consensus ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
 
. : . : . : . : . : . :
rJMSF047K23+ AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMSF022J21+ AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMSF049D19+ AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMSF034F10+ AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMFF050M03+ AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
                      ____________________________________________________________
consensus AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
 
. : . : . : . : . : . :
rJMSF047K23+ CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTT
rJMSF022J21+ CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
rJMSF049D19+ CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
rJMSF034F10+ CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
rJMFF050M03+ CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
                      ____________________________________________________________
consensus CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
 
. : . : . : . : . : . :
rJMSF022J21+ TGCTCATGCTAGAGAT
rJMSF049D19+ TGCTCATGCTAGAGAT
rJMSF034F10+ TGCTCATGCTAGAGAT
rJMFF050M03+ TGCTCATGCTAGAGATTAATATCTATTCTGTAAAATCTATATAATTGAATTAAAGAATCC
                      ____________________________________________________________
consensus TGCTCATGCTAGAGATTAATATCTATTCTGTAAAATCTATATAATTGAATTAAAGAATCC