Contig 004167:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050M03Sequence631012184 (6)ref|XP_006359849.1|2e-46PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]571004167 (5)ref|XP_004247413.1|4e-46PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF022J21Sequence639012184 (6)ref|XP_006359849.1|5e-78PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]778004167 (5)ref|XP_009770640.1|3e-102PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF034F10Sequence689012184 (6)ref|XP_006359849.1|7e-59PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]739004167 (5)ref|XP_009770640.1|8e-94PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF047K23Sequence693012184 (6)ref|XP_006359849.1|5e-60PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]711004167 (5)ref|XP_009770640.1|9e-98PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF049D19Sequence693012184 (6)ref|XP_006359849.1|2e-60PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]781004167 (5)ref|XP_009770640.1|4e-101PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+                                                     GTTAGGAAGACCATTGA
rJMSF022J21+                                  AAAAGTTCAGAACTTGGAGGTTAGGAAGACCATTGA
rJMSF049D19+                          GGTTAAGGAAAAGTTCAGAACTTGGAGGTTAGGAAGACCATTGA
rJMSF034F10+                                                                    GA
                      ____________________________________________________________
consensus                             GGTTAAGGAAAAGTTCAGAACTTGGAGGTTAGGAAGACCATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
rJMSF022J21+          AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
rJMSF049D19+          AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
rJMSF034F10+          AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
                      ____________________________________________________________
consensus             AGCTTTGGATCAGTTAAGGGGAATGCCGGCTAGAGGAGATGTTGAGACTGGAGAAATCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
rJMSF022J21+          ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
rJMSF049D19+          ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
rJMSF034F10+          ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
                      ____________________________________________________________
consensus             ATCTTTGGTTGATTTGGGTCTCAATCCTACTGCTACAATGAGCCAGAATGGAAAGCCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
rJMSF022J21+          TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
rJMSF049D19+          TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
rJMSF034F10+          TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
                      ____________________________________________________________
consensus             TGCTAATGCTTCCCTTGTTGGAGGAGAGAGCGAAGCCTTGCAGAGAGTTAAGAAGTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMSF022J21+          AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMSF049D19+          AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMSF034F10+          AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
rJMFF050M03+                                       GAAACAAGACTGGTGGAAACGATAGCATATA
                      ____________________________________________________________
consensus             AGCTGAATGCCAAGAGCAACCGAATCAAGGAAACAAGACTGGTGGAAACGATAGCATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMSF022J21+          CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMSF049D19+          CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMSF034F10+          CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
rJMFF050M03+          CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
                      ____________________________________________________________
consensus             CGGTGCAAACTTTTCCTGCAAAATATCTCCCTGGCTCGCTATGGGATGCCTCTCCCCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMSF022J21+          GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMSF049D19+          GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMSF034F10+          GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
rJMFF050M03+          GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAGGAAAATTTCCTGTTGCCTCTAAAGT
                      ____________________________________________________________
consensus             GTCTATGTTTGATGAGTTGAAGAAGTCTACATCAAGAAAATTTCCTGTTGCCTCTAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMSF022J21+          GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMSF049D19+          GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMSF034F10+          GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
rJMFF050M03+          GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
                      ____________________________________________________________
consensus             GAAAGATGGTGGTAGCGGTGGCACTGGACCAAACTGGTTGATGTATGAGCTGATGTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMSF022J21+          AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMSF049D19+          AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMSF034F10+          AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
rJMFF050M03+          AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
                      ____________________________________________________________
consensus             AGATTTCTTCAGATTCATCACCAAGAAATACAGCTCTGCTAGACAAAACAGCACCGCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMSF022J21+          AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMSF049D19+          AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMSF034F10+          AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
rJMFF050M03+          AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
                      ____________________________________________________________
consensus             AGTGACAGTATGTGCAGGGGCCGCGGTAAATTGAAATAGACATCATTGTACCAGGGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMSF022J21+          ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMSF049D19+          ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMSF034F10+          ACTTCACCTCGTATCTTCGTTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
rJMFF050M03+          ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
                      ____________________________________________________________
consensus             ACTTCACCTCGTATCTTCATTTGACATCAATGAAGCAGGGAGTATTGAGGTTGTCTAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMSF022J21+          AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMSF049D19+          AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMSF034F10+          AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
rJMFF050M03+          AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
                      ____________________________________________________________
consensus             AAGGTTGATAGAAATTCATCATTTGTAGCTAGCAGTGTTTAGTGACTTTAGTCTATTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047K23+          CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTT                          
rJMSF022J21+          CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
rJMSF049D19+          CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
rJMSF034F10+          CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
rJMFF050M03+          CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
                      ____________________________________________________________
consensus             CAGACTGTCTTCTTGGTAGGCTATGGTGTGTTTTTGTATTGTGGACATTTGTCGAAAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022J21+          TGCTCATGCTAGAGAT                                            
rJMSF049D19+          TGCTCATGCTAGAGAT                                            
rJMSF034F10+          TGCTCATGCTAGAGAT                                            
rJMFF050M03+          TGCTCATGCTAGAGATTAATATCTATTCTGTAAAATCTATATAATTGAATTAAAGAATCC
                      ____________________________________________________________
consensus             TGCTCATGCTAGAGATTAATATCTATTCTGTAAAATCTATATAATTGAATTAAAGAATCC