Contig 004162:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012M16Sequence521013382 (9)ref|XP_006347390.1|199PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]685004162 (8)ref|XP_002525667.1|1e-19conserved hypothetical protein [Ricinus communis] gb|EEF36785.1| conserved hypot
JMFF025C13Sequence441013382 (9)ref|XP_006347390.1|111PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]711004162 (8)ref|XP_002525667.1|2e-33conserved hypothetical protein [Ricinus communis] gb|EEF36785.1| conserved hypot
JMFF045F06Sequence627013382 (9)ref|XP_006347390.1|162PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]596004162 (8)emb|CDP18515.1|1e-10unnamed protein product [Coffea canephora]
JMFF046A04Sequence571013382 (9)ref|XP_006347390.1|219PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]563004162 (8)ref|XP_002525667.1|1e-10conserved hypothetical protein [Ricinus communis] gb|EEF36785.1| conserved hypot
JMFF050B04Sequence630013382 (9)ref|XP_006347390.1|197PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]633004162 (8)ref|XP_002525667.1|1e-10conserved hypothetical protein [Ricinus communis] gb|EEF36785.1| conserved hypot
JMFF050K06Sequence574013382 (9)ref|XP_006347390.1|217PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]596004162 (8)emb|CDP18515.1|1e-10unnamed protein product [Coffea canephora]
JMSF025P13Sequence693013382 (9)ref|XP_006347390.1|236PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]739004162 (8)ref|XP_002525667.1|1e-43conserved hypothetical protein [Ricinus communis] gb|EEF36785.1| conserved hypot
JMSF037G17Sequence623013382 (9)ref|XP_006347390.1|118PREDICTED: uncharacterized protein LOC102602040 [Solanum tuberosum]695004162 (8)ref|XP_002525667.1|4e-34conserved hypothetical protein [Ricinus communis] gb|EEF36785.1| conserved hypot

Alignment

This contig is upended


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rJMSF025P13+                         GTTGGAGAGCATAGGATTACAAGTGGACATATTGCTTTGTTCCTA
                      ____________________________________________________________
consensus                            GTTGGAGAGCATAGGATTACAAGTGGACATATTGCTTTGTTCCTA
 
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rJMSF037G17+           TTAGTCGGTTTAAGACTGCAATCCGTGAAACTTTGGTGCTACCAAACTGTGAAAGTGTA
rJMSF025P13+          ATTAGTCGGTTTAAGACTGCAATCCGTGAAACTTTGGTGCTACCAAACTGTGAAAGTGTA
rJMFF025C13+           TTAGTCGGTTTAAGACTGCAATCCGTGAAACTTTGGTGCTACCAAACTGTGAAAGTGTA
rJMFF012M16+                                             GGTGCTACCAAACTGTGAAAGTGTA
                      ____________________________________________________________
consensus             ATTAGTCGGTTTAAGACTGCAATCCGTGAAACTTTGGTGCTACCAAACTGTGAAAGTGTA
 
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rJMSF037G17+          AGCCTGGGTTGGATGTTAGCAGAAAAGGAAGA-CTGGGTCCCTAGCAAAGTTGCTCCATT
rJMSF025P13+          AGCCTGGGTTGGATGTTAGCAGAAAAGGAAGA-CTGGGTCCCTAGCAAAGTTGCTCCATT
rJMFF025C13+          AGCCTGGGTTGGATGTTAGCAGAAAAGGAAGA-CTGGGTCCCTAGCAAAGTTGCTCCATT
rJMFF012M16+          AGCCTGGGTTGGATGTTAGCAGAAAAGGAAGACCTGGGTCCCAAGCAAAGTTGCTCCATT
                      ____________________________________________________________
consensus             AGCCTGGGTTGGATGTTAGCAGAAAAGGAAGA-CTGGGTCCCTAGCAAAGTTGCTCCATT
 
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rJMSF037G17+          CATATGGATTAATAATCAAGAAGTGGCAAGCACTGAGCACGAGGAAGCTAAACATTTGGA
rJMSF025P13+          CATATGGATTAATAATCAAGAAGTGGCAAGCACTGAGCACGAGGAAGCTAAACATTTGGA
rJMFF025C13+          CATATGGATTAATAATCAAGAAGTGGCAAGCACTGAGCACGAGGAAGCTAAACATTTGGA
rJMFF012M16+          CATATGGATTAATAATCAAGAAGTGGCAAGCACTGAGCACGAGGAAGCTAAACATTTGGA
rJMFF050K06+                                                           AAACATTTGGA
rJMFF045F06+                                                           AAACATTTGGA
rJMFF050B04+                                  GGCAAGCACTGAGCACGAGGAAGCTAAACATTTGGA
                      ____________________________________________________________
consensus             CATATGGATTAATAATCAAGAAGTGGCAAGCACTGAGCACGAGGAAGCTAAACATTTGGA
 
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rJMSF037G17+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
rJMSF025P13+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
rJMFF025C13+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
rJMFF012M16+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
rJMFF050K06+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
rJMFF045F06+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
rJMFF046A04+                                               GGAATACAGGAAGGATGGAACAA
rJMFF050B04+          TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
                      ____________________________________________________________
consensus             TGAAGCTAATAGAGAAAGTGGCAGCAGCGATCAAGAGGGAATACAGGAAGGATGGAACAA
 
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rJMSF037G17+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMSF025P13+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMFF025C13+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMFF012M16+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMFF050K06+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMFF045F06+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMFF046A04+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
rJMFF050B04+          CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
                      ____________________________________________________________
consensus             CAGTGGATCACCTTTACAAGAAGCACCAAATGATTGTTTGGACCCTAAAGACCAGTCAAC
 
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rJMSF037G17+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMSF025P13+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMFF025C13+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMFF012M16+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMFF050K06+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMFF045F06+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMFF046A04+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
rJMFF050B04+          GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
                      ____________________________________________________________
consensus             GATGAAGAGTAGTGTGAAAGAATTGCAAGCCCCTTTGTTGACTTGTGAAGAACAGCAGGA
 
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rJMSF037G17+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMSF025P13+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMFF025C13+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMFF012M16+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMFF050K06+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMFF045F06+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMFF046A04+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
rJMFF050B04+          GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
                      ____________________________________________________________
consensus             GTGTGAACGCAGCAGCAGCAGCTCAGAGAAGGTGGAATGTTACTCATCACCATCTCGACC
 
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rJMSF037G17+          ACTGGAGGAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMSF025P13+          ACTGGAGGAATATCATATTTCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMFF025C13+          ACTGGAGAAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMFF012M16+          ACTGGAGGAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMFF050K06+          ACTGGAGGAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMFF045F06+          ACTGGAGGAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMFF046A04+          ACTGGAGGAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
rJMFF050B04+          ACTGGAGAAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
                      ____________________________________________________________
consensus             ACTGGAGGAATATCATATTGCAGAACCAAAACGAATGGGATTGGGATCGACCAGAGCAAA
 
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rJMSF037G17+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMSF025P13+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMFF025C13+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMFF012M16+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMFF050K06+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMFF045F06+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMFF046A04+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
rJMFF050B04+          GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
                      ____________________________________________________________
consensus             GATGCTTGGGCTGAGCAAAAAAATGGGGGAAAAGCTTGAAGAGAAGAGACGTCATATTGA
 
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rJMSF037G17+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
rJMSF025P13+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
rJMFF025C13+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
rJMFF012M16+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTGAACGAAAGAAAATAC
rJMFF050K06+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
rJMFF045F06+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
rJMFF046A04+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTGAACGAAAGAAAATAC
rJMFF050B04+          AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
                      ____________________________________________________________
consensus             AGAAAAGGGAAGGCACATTGTTGAAAAGATGAGAGGACAACAGTAAACGAAAGAAAATAC
 
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rJMSF037G17+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
rJMSF025P13+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGTGTTG
rJMFF025C13+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
rJMFF012M16+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
rJMFF050K06+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
rJMFF045F06+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
rJMFF046A04+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATTTGATATTTGATTGGTAAATTGAGTTG
rJMFF050B04+          AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
                      ____________________________________________________________
consensus             AAAAAGCCCCCCTTCCCTTGTATGTTAACACATCTGATATTTGATTGGTAAATTGAGTTG
 
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rJMSF037G17+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATT                          
rJMSF025P13+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTT                         
rJMFF025C13+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGA       
rJMFF012M16+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGATTTCAAC
rJMFF050K06+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGATTTCAAC
rJMFF045F06+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGATTTCAAC
rJMFF046A04+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGATTTCAAC
rJMFF050B04+          TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGATTTCAAC
                      ____________________________________________________________
consensus             TAATTTTGCAGTGCAGTGCAGGAAATGATTGATTTATATCTCAACTTAATAGATTTCAAC
 
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rJMFF050K06+          ATCTTTCGTTTAGAGTACGAAAAAAAAAAAAA                            
rJMFF045F06+          ATCTTTCGTTTAGAGTACGAAAAAAAAAAAAA                            
rJMFF046A04+          ATCTTTCGTTTAGAGTACGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
rJMFF050B04+          ATCTTTCGTTTAGAGTA---AAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATCTTTCGTTTAGAGTACGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG