Contig 004158:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007M07Sequence292004158 (2)gb|KDP25216.1|9e-05hypothetical protein JCGZ_20372 [Jatropha curcas]
JMFF049O22Sequence598023779ref|XP_009625633.1|2e-43PREDICTED: protein IQ-DOMAIN 1-like [Nicotiana tomentosiformis]374004158 (2)gb|KDP25216.1|4e-09hypothetical protein JCGZ_20372 [Jatropha curcas]

Alignment

This contig is upended


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rJMFF049O22+                                                        CGGCAAAAGCCCGT
                      ____________________________________________________________
consensus                                                           CGGCAAAAGCCCGT
 
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rJMFF007M07+                   CAGAGCGCACCCCGGCAGAGGCCCTCCNCNCCGGCGAAGAGATGCTTATCT
rJMFF049O22+          CTCCGATCACAGAGCGCACCCCGGCAGAGGCCCTCCACGCCGGCGAAGAGATGCTTATCT
                      ____________________________________________________________
consensus             CTCCGATCACAGAGCGCACCCCGGCAGAGGCCCTCCACGCCGGCGAAGAGATGCTTATCT
 
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rJMFF007M07+          TACTCCATCTCCGTCAAGAATGGTGAAGAAGGGGTGGAGAAGCGGTCGGAGTAGTAGTGT
rJMFF049O22+          TACTCCATCTCCGTCAAGAATGGTGAAGAAGGGGTGGAGAAGCGGTCGGAGTACTAGTGT
                      ____________________________________________________________
consensus             TACTCCATCTCCGTCAAGAATGGTGAAGAAGGGGTGGAGAAGCGGTCGGAGTAGTAGTGT
 
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rJMFF007M07+          AATAATAATAATNCAGAGAGGGAGAGCGTTGGGGGAGAGATTTCGCCATGTTCAACCACC
rJMFF049O22+          AATAATAATAATACACAGAGGGAGAGCGTTGGGGGAGAGATTTCTCCATGTTCTACCACC
                      ____________________________________________________________
consensus             AATAATAATAATACAGAGAGGGAGAGCGTTGGGGGAGAGATTTCTCCATGTTCTACCACC
 
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rJMFF007M07+          AATTCAAGATGGTGGTGAAGATGAGATGATGTTGTCAGAAAGGAAGGGTGACGAGGATAG
rJMFF049O22+          AATTCAAGATGGTGGTGAAGATGAGATGATGTTGTCAGAAAGGAAGGGTGACGAGGATAG
                      ____________________________________________________________
consensus             AATTCAAGATGGTGGTGAAGATGAGATGATGTTGTCAGAAAGGAAGGGTGACGAGGATAG
 
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rJMFF007M07+          TAATGTAATGATGGTAGTGATGTGGTTTAGCTTTTGTTATCTCCTTTGTTTAGGCAAGTG
rJMFF049O22+          TAATGTAATGATGGTAGTGATGTGGTTTAGCTTTTGTTATCTCCTTTGTTTAGGCAAGTG
                      ____________________________________________________________
consensus             TAATGTAATGATGGTAGTGATGTGGTTTAGCTTTTGTTATCTCCTTTGTTTAGGCAAGTG
 
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rJMFF007M07+          A                                                           
rJMFF049O22+          AGCAGTTAAACACTTGACCACTTTAAACTCTACTCACTTAAATAAAGCTTTAAATCAGTC
                      ____________________________________________________________
consensus             AGCAGTTAAACACTTGACCACTTTAAACTCTACTCACTTAAATAAAGCTTTAAATCAGTC