Contig 004156:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015P18Sequence527002238 (10)572004156 (7)emb|CDP16729.1|3e-65unnamed protein product [Coffea canephora]
JMFF049I19Sequence391002238 (10)184004156 (7)
JMSF002O14Sequence249002238 (10)658004156 (7)emb|CDP16729.1|2e-85unnamed protein product [Coffea canephora]
JMSF023L02Sequence571002238 (10)668004156 (7)emb|CDP16729.1|3e-93unnamed protein product [Coffea canephora]
JMSF037D15Sequence538002238 (10)662004156 (7)emb|CDP16729.1|6e-90unnamed protein product [Coffea canephora]
JMSF043C02Sequence463002238 (10)730004156 (7)emb|CDP16729.1|2e-110unnamed protein product [Coffea canephora]
JMSF043F12Sequence547002238 (10)635004156 (7)emb|CDP16729.1|8e-79unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF043C02+                              TNTGCCAGCAGATGANTAATGCAGCACTGATAGCTGTTGC
                      ____________________________________________________________
consensus                                 TNTGCCAGCAGATGANTAATGCAGCACTGATAGCTGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L02+               ATTGCCCTAATTTCATTCGCTTTAGGTTGTGCACCCTTAACCCAACTGTGCCAGA
rJMSF037D15+               ATTGCCCTAATTTCATTCGCTTTAGGTTGTGCACCCTTAACCCAACTGTGCCAGA
rJMSF002O14+               ATTGCCCTAATTTCATTCGCTTTAGGTTGTGCACCCTTAACCCAACTGTGCCAGA
rJMSF043F12+                                                               TGCCAGA
rJMSF043C02+          CAAGAATTGCCCTAATTTCATTCGCTTTAGGTTGTGCACCCTTAACCCAACTGTGCCAGA
                      ____________________________________________________________
consensus             CAAGAATTGCCCTAATTTCATTCGCTTTAGGTTGTGCACCCTTAACCCAACTGTGCCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L02+          TGCAGTGACAATGCAGCCATTGGATGAGGGTTTTGGGGCAATTGTTCAATCATGCAAAGG
rJMSF037D15+          TGCAGTGACAATGCAGCCATTGGATGNGGGTTTTGGGGCAATTNTTCAATCATGCAAAGG
rJMSF002O14+          TGCAGTGACAATGCAGCCATTGGATGAGGGTTTTGGGGCAATTGTTCAATCATGCAAAGG
rJMSF043F12+          TGCAGTGACAATGCAGCCATTGGATGAGGGTTTTGGGGCAATTGTTCAATCATGCAAAGG
rJMSF043C02+          TGCAGTGACAATGCAGCCATTGGATGAGGGTTTTGGGGCAATTGTTCAATCATGCAAAGG
                      ____________________________________________________________
consensus             TGCAGTGACAATGCAGCCATTGGATGAGGGTTTTGGGGCAATTGTTCAATCATGCAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L02+          GCTTAAGNGGTTNTCCGTNTNTGGCCTTNTAACTGATCNGGTTTTCCTATACNTTGGTAT
rJMSF037D15+          GCTTAAGNGGTTNTCCGTNTTTGGCCTTNTAANTGATCAGGTTTTCCTATACNTTGGTAT
rJMSF002O14+          GCTTAAGNGGTTATCCGTTTNTGGCCTTTTAACTGATCAGGTTTTCCTATACATTGGTAT
rJMSF043F12+          GCTTAAGNGGTTATCCGTNTNTGGCCTTTTAACTGATCAGGTTTTCCTATACATTGGTAT
rJMSF043C02+          GCTTAAGAGGTTNTCCGTNTNTGGCCTTNTAACTGATCAGGTTTTCCTATACNTTGGTAT
rJMFF015P18+                               TGGCCTTTTAACTGATCAGGTTTTCCTATACATTGGTAT
                      ____________________________________________________________
consensus             GCTTAAGAGGTTATCCGTTTTTGGCCTTTTAACTGATCAGGTTTTCCTATACATTGGTAT
 
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rJMSF023L02+          GTATGCAGAGCAGCTTGAAATGCTNTCCATAGCCTTTGCTGGTAAGAGNGACAAGGGAAT
rJMSF037D15+          GTATGCAGAGCAGCTTGAAATGCTNTCCATAGCCTTTGCTGGTAAGAGNGACAAGGGAAT
rJMSF002O14+          GTATGCAGAGCAGCTTGAAATGCTNTCCATAGCCTTTGCTGGTAAGAGTGNCAAGGGAAT
rJMSF043F12+          GTATGCAGAGCAGCTTGAAATGCTNTCCATAGCCTTTGCTGGTAAGAGNGACAAGGGAAT
rJMSF043C02+          GTATGCAGAGCAGCTTGAAATGCTNTCCATAGCCTTTGCTGGTAAGAGTGACAAGGGAAT
rJMFF015P18+          GTATGCAGAGCAGCTTGAAATGCTTTCCATAGCCTTTGNTGGTAAGAGNGACAAGGGAAT
                      ____________________________________________________________
consensus             GTATGCAGAGCAGCTTGAAATGCTTTCCATAGCCTTTGCTGGTAAGAGTGACAAGGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L02+          GCTTTATNTTTTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
rJMSF037D15+          GCTTTATNTTTTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
rJMSF002O14+          GCTTTATNTTTTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
rJMSF043F12+          GCTTTATGTTNTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
rJMSF043C02+          GCTTTATGTTNTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
rJMFF015P18+          GCTTTATGTTTTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
                      ____________________________________________________________
consensus             GCTTTATGTTTTAAATGGATGCAAGAAACTAAAGAAGCTTGNGATCAGAGATAGCCCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L02+          TGGTAATGCAGCNCTTNTAGCGGACGNGGGGAAGTNTGAAACAATGCGATCCCTTTGGAT
rJMSF037D15+          TGGTAATGCAGCNCTTNTAGCGGACGNGGGGAAGTNTGAAACAATGCGATCCCTTTGGAT
rJMSF002O14+          TGGTAATGCAGCNCTTNTAGCGGACGNGGGGAAGTNTGAAACAATGCGATCCCTTTGGAT
rJMSF043F12+          TGGTAATGCAGCNCTTNTAGCGGACGNGGGGAAGTNTGAAACAATGCGATCCCTTTGGAT
rJMSF043C02+          TGGTAATGCAGCNCTTNTAGCGGACGNGGGGAAGTATGAAACAATGCGATCCCTTTGGAT
rJMFF015P18+          TGGTAATGCAGCNCTTTTAGNGGACGNGGGGAAGTATGAAACAATGNGATCCCTTTGGAT
                      ____________________________________________________________
consensus             TGGTAATGCAGCNCTTTTAGCGGACGNGGGGAAGTATGAAACAATGCGATCCCTTTGGAT
 
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rJMSF023L02+          GTCGTCCTGNGAAGTGACCCTCGGNGCNTGCAAGATTNTGGCCAAGAAGATGCCNAGACT
rJMSF037D15+          GTCGTCCTGNGAAGTGACCCTCGGNGCNTGCAAGATTNTGGCCAAGAAGATGCCAAGACT
rJMSF002O14+          GTCGTCCTGNGAAGTGACCCTCGGNGCNTGCAAGATTNTGGCCAAGAAGATGCCNAGACT
rJMSF043F12+          GTCGTCCTGNGAAGTGACCCTCGGNGCNTGCAAGATTNTGGCCAAGAAGATGCCNAGACT
rJMSF043C02+          GTCGTCCTGNGAAGTGACCCTCGGNGCNTGCAAGATTNTGGCCAAGAAGATGCCAAGACT
rJMFF015P18+          GTNGTCCTGNGAAGNGACCCTCGGNGCATGCAAGATTTTGGCCAAGAAGATGCCAAGACT
                      ____________________________________________________________
consensus             GTCGTCCTGNGAAGTGACCCTCGGNGCATGCAAGATTTTGGCCAAGAAGATGCCAAGACT
 
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rJMSF023L02+          GAATGTGGAAATCATCAATGAGAGTGAGCNGGCAGAGACTAGCCNTGATGATGGGCNGAA
rJMSF037D15+          GAATGTGGAAATCNTCAATGNGAGTGAGCNGGCAGNGACTAGCCNTGATGATGGGCNGAA
rJMSF002O14+          GAATGTGGAAATCATCAATGNGAGTGAGCNGGCAGNGACTAGCCNTGATGATGGGCNGAA
rJMSF043F12+          GAATGTGGAAATCATCAATGAGAGTGAGCNGGCAGAGACTAGCCNTGATGATGGGCNGAA
rJMSF043C02+          GAATGTGGAAATCATCAATGAGAGTGAGCNGGCAGAGACTAGCCNTGATGATGGGCNGAA
rJMFF015P18+          GAATGTGGAAATCATCAATGNGAGNGAGCAGGCAGAGACTAGCCATGATGATGGGCAGAA
                      ____________________________________________________________
consensus             GAATGTGGAAATCATCAATGAGAGTGAGCAGGCAGAGACTAGCCATGATGATGGGCAGAA
 
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rJMSF023L02+          GGTAGAGAAAATGTACTTGTACCGGACNTTGGCTGGGCCCNGGAAAGATGCCCCCGGCTT
rJMSF037D15+          GGTAGAGAAAATGTACTTGTACCGGACNTTGGCTGGGCCCNGGAAAGATGCCCCCGGCTT
rJMSF002O14+          GGTAGAGAAAATGTACTTGTACCGGNCNTTGGCTGGGCCCNGGAAAGATGCCCCNGGCTT
rJMSF043F12+          GGTAGNGAAAATGTACTTGTACCGGACNTTGGCTGGGCCCNGGAAAGATGCCCCNGGCTT
rJMSF043C02+          GGTAGAGAAAATGTACTTGTACCGGACNTTGGCTGGGCNCNGGAAAGATGCCCCCGGCTT
rJMFF015P18+          GGTAGAGAAAANGTACTTGTNCCGGACATTGGCTGGGCNCAGGAAAGATGCNCCAGGCTT
rJMFF049I19+                                                                 GGCTT
                      ____________________________________________________________
consensus             GGTAGAGAAAATGTACTTGTACCGGACATTGGCTGGGCCCAGGAAAGATGCCCCCGGCTT
 
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rJMSF023L02+          TGTGTGGNCNCNATAGATGTGCCCCTTGTNTTCNTTGCTCCCNGCTGTTAATTGT-CNGG
rJMSF037D15+          TGTGTGGNCNCTATAGATGTGCCCCTTGTNTTCATTGCTCCCNGCTGTTAATTGT-CNGG
rJMSF002O14+          TGTGTGGACNCTATAGATGTGCCCCTTGTNTTCNTTGCTCCCNGCTGTTAATTGTCCNGG
rJMSF043F12+          TGTGTGGACNCTATAGATGTGCCCCTTGTNTTCNTTGCTCCCAGCTGTTAATTGT-CNGG
rJMSF043C02+          TGTGTGGNCNCTATAGATGTGCCCCTTGTNTTCATTGCTCCCAGCTGTTAATTGT-CNGG
rJMFF015P18+          TGTGNGGACNCTATAGANGNGCCCCTTGTTTTCATTGCTCCCAGCTGTTAATTGT-CAGG
rJMFF049I19+          TGTGTGGACACTATAGATGTGCACCTTGTCTTCTTTGCTCCCGGCTGTTAATTGT-CAGG
                      ____________________________________________________________
consensus             TGTGTGGACACTATAGATGTGCCCCTTGTTTTCATTGCTCCCAGCTGTTAATTGT-CAGG
 
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rJMSF023L02+          GTAGTTTGATTAAGANCNGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
rJMSF037D15+          GTAGTTTGATTAAGANCNGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
rJMSF002O14+          GTAGTTTGATTAAGAACNGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
rJMSF043F12+          GTAGTTTGATTAAGAACNGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
rJMSF043C02+          GTAGTTTGATTAAGANCNGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
rJMFF015P18+          GTAGTTTGATTAAGA-CTGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
rJMFF049I19+          GTAGTTTGTTTAAGA-CTGGAACT-GTTTTTTTTTTTCTGATGGTGGTTTATTTGTGCTT
                      ____________________________________________________________
consensus             GTAGTTTGATTAAGAACTGGAACTATTTTTTTTTTTTCTGATGGTGAATTATTTGTGCTT
 
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rJMSF023L02+          TGGTA                                                       
rJMSF037D15+          TGGT                                                        
rJMSF002O14+          TGG                                                         
rJMSF043F12+          TGGTA                                                       
rJMSF043C02+          TGGTA                                                       
rJMFF015P18+          TGGTACTGGTATTTTATTTGGGGAAAAAAA                              
rJMFF049I19+          TGGTACTGGTATTTTATTTGGGGAAAAAAAGTTAATTTTATCAGAGCCAGTTTATGCAAA
                      ____________________________________________________________
consensus             TGGTACTGGTATTTTATTTGGGGAAAAAAAGTTAATTTTATCAGAGCCAGTTTATGCAAA