Contig 004153:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049C13Sequence512010327 (6)ref|XP_007026438.1|3e-23Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gb|EOY2296004153 (2)
JMSF021L22Sequence667010327 (6)ref|XP_010647088.1|4e-40PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Vitis vinifera]769004153 (2)ref|XP_009374806.1|4e-29PREDICTED: myb family transcription factor APL isoform X1 [Pyrus x bretschneide

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF021L22+ TGTG
                      ____________________________________________________________
consensus TGTG
 
. : . : . : . : . : . :
rJMSF021L22+ CAAGGGCTGACAATTATCATGTAAAAAGCCATTTACAGCATCCAGAAATATCGACTTTCC
                      ____________________________________________________________
consensus CAAGGGCTGACAATTATCATGTAAAAAGCCATTTACAGCATCCAGAAATATCGACTTTCC
 
. : . : . : . : . : . :
rJMSF021L22+ AAATACCTTCCCGATGCATCATCTGATGGAAAAAAACCCGACAAGAAAGATTCAAGTGAT
                      ____________________________________________________________
consensus AAATACCTTCCCGATGCATCATCTGATGGAAAAAAACCCGACAAGAAAGATTCAAGTGAT
 
. : . : . : . : . : . :
rJMSF021L22+ ATAATCTCCGGCCTAGATGATTCATCTGGAATGCAAATAACTGAGGCACTAAAATTGCAG
                      ____________________________________________________________
consensus ATAATCTCCGGCCTAGATGATTCATCTGGAATGCAAATAACTGAGGCACTAAAATTGCAG
 
. : . : . : . : . : . :
rJMSF021L22+ ATGGAGGTCCAAAAGCGCCTACACGAGCAACTAGAGGTTCAGCGCCAGCTACAGCTAAGG
                      ____________________________________________________________
consensus ATGGAGGTCCAAAAGCGCCTACACGAGCAACTAGAGGTTCAGCGCCAGCTACAGCTAAGG
 
. : . : . : . : . : . :
rJMSF021L22+ ATAGAGGCCCAAGGCAAGTATTTGAAGAAGATAATAGAAGAACAACAGCAACTCGAAATG
                      ____________________________________________________________
consensus ATAGAGGCCCAAGGCAAGTATTTGAAGAAGATAATAGAAGAACAACAGCAACTCGAAATG
 
. : . : . : . : . : . :
rJMSF021L22+ CCAGAGTCCTCTGGGGCTACGTCTGCATCAGCAGGCGAGAATGCCCCGGTATCTGATAAC
                      ____________________________________________________________
consensus CCAGAGTCCTCTGGGGCTACGTCTGCATCAGCAGGCGAGAATGCCCCGGTATCTGATAAC
 
. : . : . : . : . : . :
rJMSF021L22+ AGTACAAATCCAGTGACGCCTGTACCTGCATCTGAAAAGCCTGAAAACGAACAACGCAAT
                      ____________________________________________________________
consensus AGTACAAATCCAGTGACGCCTGTACCTGCATCTGAAAAGCCTGAAAACGAACAACGCAAT
 
. : . : . : . : . : . :
rJMSF021L22+ CCAGTTAAGGGCATTTCGCTTAATGCCTCGCCATCTTCTCATAACGAGGCTCTTTCACCA
                      ____________________________________________________________
consensus CCAGTTAAGGGCATTTCGCTTAATGCCTCGCCATCTTCTCATAACGAGGCTCTTTCACCA
 
. : . : . : . : . : . :
rJMSF021L22+ GATTCCAGCTGCCCTGCAGTCGAGAGGCCATCAAAGAAGCAAAAAGTTAGCGCAGAAGCT
                      ____________________________________________________________
consensus GATTCCAGCTGCCCTGCAGTCGAGAGGCCATCAAAGAAGCAAAAAGTTAGCGCAGAAGCT
 
. : . : . : . : . : . :
rJMSF021L22+ GCTGCGTTTACCCAACCTGATGCAATGCTTACTAAGTTACTTGGCTGAAGCTTGACAAGT
rJMFF049C13+ CGTTTACCCAACCTGATGCAATGCTTAGTAAGTTACTTGGCTGAAGCTTGACAAGT
                      ____________________________________________________________
consensus GCTGCGTTTACCCAACCTGATGCAATGCTTAGTAAGTTACTTGGCTGAAGCTTGACAAGT
 
. : . : . : . : . : . :
rJMSF021L22+ CATCAGATCAGAGCGAGAGTTTCAGGTTGGCAAGTTTTACGTTTTTTATGTGTAACATTA
rJMFF049C13+ CATCAGATCAGAGCGAGAGTTTCAGGTTGGCAAGTTTTACGTTTTTTATGTGTAACATTA
                      ____________________________________________________________
consensus CATCAGATCAGAGCGAGAGTTTCAGGTTGGCAAGTTTTACGTTTTTTATGTGTAACATTA
 
. : . : . : . : . : . :
rJMSF021L22+ ATAGTTAAAACAGGGTTTGATTAGGACATAGAAACTGCTTGCTTCTTAAATGTGTGTTGC
rJMFF049C13+ ATAGTTAAAACAGGGTTTGATTAGGACATAGAAACTGCTTGCTTCTTAAATGTGTGTTGC
                      ____________________________________________________________
consensus ATAGTTAAAACAGGGTTTGATTAGGACATAGAAACTGCTTGCTTCTTAAATGTGTGTTGC
 
. : . : . : . : . : . :
rJMSF021L22+ CTTGGTTCACTCATCTTAATTTAGTACC
rJMFF049C13+ CTTGGTTCACTCATCTTAATTTAGTACCAGTTGCTTAAACTTTTGCCTAATGCTAAATAA
                      ____________________________________________________________
consensus CTTGGTTCACTCATCTTAATTTAGTACCAGTTGCTTAAACTTTTGCCTAATGCTAAATAA
 
. : . : . : . : . : . :
rJMFF049C13+ AAATGTGAATTATACTGCCTAAAAAAAAAAAAAAGAAAAAAAAAAAAAACGCTCCAGGGT
                      ____________________________________________________________
consensus AAATGTGAATTATACTGCCTAAAAAAAAAAAAAAGAAAAAAAAAAAAAACGCTCCAGGGT