Contig 004153:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049C13Sequence512010327 (6)ref|XP_007026438.1|3e-23Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gb|EOY2296004153 (2)
JMSF021L22Sequence667010327 (6)ref|XP_010647088.1|4e-40PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Vitis vinifera]769004153 (2)ref|XP_009374806.1|4e-29PREDICTED: myb family transcription factor APL isoform X1 [Pyrus x bretschneide

Alignment

This contig is upended


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rJMSF021L22+                                                                  TGTG
                      ____________________________________________________________
consensus                                                                     TGTG
 
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rJMSF021L22+          CAAGGGCTGACAATTATCATGTAAAAAGCCATTTACAGCATCCAGAAATATCGACTTTCC
                      ____________________________________________________________
consensus             CAAGGGCTGACAATTATCATGTAAAAAGCCATTTACAGCATCCAGAAATATCGACTTTCC
 
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rJMSF021L22+          AAATACCTTCCCGATGCATCATCTGATGGAAAAAAACCCGACAAGAAAGATTCAAGTGAT
                      ____________________________________________________________
consensus             AAATACCTTCCCGATGCATCATCTGATGGAAAAAAACCCGACAAGAAAGATTCAAGTGAT
 
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rJMSF021L22+          ATAATCTCCGGCCTAGATGATTCATCTGGAATGCAAATAACTGAGGCACTAAAATTGCAG
                      ____________________________________________________________
consensus             ATAATCTCCGGCCTAGATGATTCATCTGGAATGCAAATAACTGAGGCACTAAAATTGCAG
 
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rJMSF021L22+          ATGGAGGTCCAAAAGCGCCTACACGAGCAACTAGAGGTTCAGCGCCAGCTACAGCTAAGG
                      ____________________________________________________________
consensus             ATGGAGGTCCAAAAGCGCCTACACGAGCAACTAGAGGTTCAGCGCCAGCTACAGCTAAGG
 
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rJMSF021L22+          ATAGAGGCCCAAGGCAAGTATTTGAAGAAGATAATAGAAGAACAACAGCAACTCGAAATG
                      ____________________________________________________________
consensus             ATAGAGGCCCAAGGCAAGTATTTGAAGAAGATAATAGAAGAACAACAGCAACTCGAAATG
 
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rJMSF021L22+          CCAGAGTCCTCTGGGGCTACGTCTGCATCAGCAGGCGAGAATGCCCCGGTATCTGATAAC
                      ____________________________________________________________
consensus             CCAGAGTCCTCTGGGGCTACGTCTGCATCAGCAGGCGAGAATGCCCCGGTATCTGATAAC
 
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rJMSF021L22+          AGTACAAATCCAGTGACGCCTGTACCTGCATCTGAAAAGCCTGAAAACGAACAACGCAAT
                      ____________________________________________________________
consensus             AGTACAAATCCAGTGACGCCTGTACCTGCATCTGAAAAGCCTGAAAACGAACAACGCAAT
 
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rJMSF021L22+          CCAGTTAAGGGCATTTCGCTTAATGCCTCGCCATCTTCTCATAACGAGGCTCTTTCACCA
                      ____________________________________________________________
consensus             CCAGTTAAGGGCATTTCGCTTAATGCCTCGCCATCTTCTCATAACGAGGCTCTTTCACCA
 
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rJMSF021L22+          GATTCCAGCTGCCCTGCAGTCGAGAGGCCATCAAAGAAGCAAAAAGTTAGCGCAGAAGCT
                      ____________________________________________________________
consensus             GATTCCAGCTGCCCTGCAGTCGAGAGGCCATCAAAGAAGCAAAAAGTTAGCGCAGAAGCT
 
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rJMSF021L22+          GCTGCGTTTACCCAACCTGATGCAATGCTTACTAAGTTACTTGGCTGAAGCTTGACAAGT
rJMFF049C13+              CGTTTACCCAACCTGATGCAATGCTTAGTAAGTTACTTGGCTGAAGCTTGACAAGT
                      ____________________________________________________________
consensus             GCTGCGTTTACCCAACCTGATGCAATGCTTAGTAAGTTACTTGGCTGAAGCTTGACAAGT
 
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rJMSF021L22+          CATCAGATCAGAGCGAGAGTTTCAGGTTGGCAAGTTTTACGTTTTTTATGTGTAACATTA
rJMFF049C13+          CATCAGATCAGAGCGAGAGTTTCAGGTTGGCAAGTTTTACGTTTTTTATGTGTAACATTA
                      ____________________________________________________________
consensus             CATCAGATCAGAGCGAGAGTTTCAGGTTGGCAAGTTTTACGTTTTTTATGTGTAACATTA
 
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rJMSF021L22+          ATAGTTAAAACAGGGTTTGATTAGGACATAGAAACTGCTTGCTTCTTAAATGTGTGTTGC
rJMFF049C13+          ATAGTTAAAACAGGGTTTGATTAGGACATAGAAACTGCTTGCTTCTTAAATGTGTGTTGC
                      ____________________________________________________________
consensus             ATAGTTAAAACAGGGTTTGATTAGGACATAGAAACTGCTTGCTTCTTAAATGTGTGTTGC
 
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rJMSF021L22+          CTTGGTTCACTCATCTTAATTTAGTACC                                
rJMFF049C13+          CTTGGTTCACTCATCTTAATTTAGTACCAGTTGCTTAAACTTTTGCCTAATGCTAAATAA
                      ____________________________________________________________
consensus             CTTGGTTCACTCATCTTAATTTAGTACCAGTTGCTTAAACTTTTGCCTAATGCTAAATAA
 
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rJMFF049C13+          AAATGTGAATTATACTGCCTAAAAAAAAAAAAAAGAAAAAAAAAAAAAACGCTCCAGGGT
                      ____________________________________________________________
consensus             AAATGTGAATTATACTGCCTAAAAAAAAAAAAAAGAAAAAAAAAAAAAACGCTCCAGGGT