| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040D03 | Sequence | 528 | 004965 (3) | emb|CDP07525.1| | 2e-62 | unnamed protein product [Coffea canephora] | 763 | 004149 (4) | ref|XP_002510373.1| | 3e-87 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] gb|EEF5 |
| JMFF048O07 | Sequence | 512 | 004965 (3) | emb|CDP07525.1| | 5e-53 | unnamed protein product [Coffea canephora] | 530 | 004149 (4) | ref|XP_007017515.1| | 1e-39 | Glucan endo-1,3-beta-glucosidase 7-beta-glucanase 7 isoform 2 [Theobroma cacao] |
| JMFN046D11 | Sequence | 541 | 004149 (4) | ref|XP_007017515.1| | 4e-42 | Glucan endo-1,3-beta-glucosidase 7-beta-glucanase 7 isoform 2 [Theobroma cacao] | |||||
| JMSF007A07 | Sequence | 211 | 004965 (3) | 798 | 004149 (4) | ref|XP_002510373.1| | 5e-72 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] gb|EEF5 | |||
This contig is upended
. : . : . : . : . : . :
rJMSF007A07+ C
____________________________________________________________
consensus C
. : . : . : . : . : . :
rJMFF040D03+ TAGCATCGAGAATGCCAAGGCTTATGTGGG
rJMSF007A07+ ATACAAGGGAGATAGCACCGAGGTCGGTCCTAGCATCGAGAATGCCAAGGCTTATGTGGG
____________________________________________________________
consensus ATACAAGGGAGATAGCACCGAGGTCGGTCCTAGCATCGAGAATGCCAAGGCTTATGTGGG
. : . : . : . : . : . :
rJMFF040D03+ GAACTTGATCACTCACTTAAGATCATTGGTTGGGACTCCATTGATGCCTAGGAAATCGGT
rJMSF007A07+ GAACTTGATCACTCACTTAAGATCATTGGTTGGGACTCCATTGATGCCTAGGAAATCGGT
____________________________________________________________
consensus GAACTTGATCACTCACTTAAGATCATTGGTTGGGACTCCATTGATGCCTAGGAAATCGGT
. : . : . : . : . : . :
rJMFF040D03+ GGACACTTATCTGTTTGCATTGTACGACGAGGACTTGAAGCCCGGGCCAACTTCAGAGCG
rJMSF007A07+ GGACACTTATCTGTTTGCATTGTACGACGAGGGCTTGAAGCCCGGGCCAACTTCAGAGCG
____________________________________________________________
consensus GGACACTTATCTGTTTGCATTGTACGACGAGGGCTTGAAGCCCGGGCCAACTTCAGAGCG
. : . : . : . : . : . :
rJMFF040D03+ CTCGTTTGGGCTCTTCAGGCCTGATTTAACCATGACTTTTGACGCTGGACTTTCAAAGAC
rJMSF007A07+ CTCGTTTGGGCTCTTCAGGCCTGATTTAACCATGACTTTTGACGCTGGACTTTCAAAGAC
____________________________________________________________
consensus CTCGTTTGGGCTCTTCAGGCCTGATTTAACCATGACTTTTGACGCTGGACTTTCAAAGAC
. : . : . : . : . : . :
rJMFF040D03+ GGTAACTCCGACGCCAGTAACTCCATCGCCCAAGAGTGGCGCTTGGTGCGTGCCAAAGGA
rJMSF007A07+ GGTAACTCCGACGCCAGTAACTCCATCGCCCAAGAGTGGCGCTTGGTGCGTGCCAAAGGA
JMFN046D11- AAAGGA
____________________________________________________________
consensus GGTAACTCCGACGCCAGTAACTCCATCGCCCAAGAGTGGCGCTTGGTGCGTGCCAAAGGA
. : . : . : . : . : . :
rJMFF040D03+ AGGCGTATCGGATGCCCAGCTGCAAGCAAATCTAGATTACGTCTGTGGGCAAGGAATCGA
rJMSF007A07+ AGGCGTATCGGATGCCCAGCTGCAAGCAAATCTAGATTACGTCTGTGGGCAAGGAATCGA
JMFN046D11- AGGCGTATCGGATGCCCAGCTGCAAGCAAATCTAGATTACGTCTGTGGGCAAGGAATCGA
rJMFF048O07+ GATGCCCAGCTGCAAGCAAATCTAGATTACGTCTGTGGGCAAGGAATCGA
____________________________________________________________
consensus AGGCGTATCGGATGCCCAGCTGCAAGCAAATCTAGATTACGTCTGTGGGCAAGGAATCGA
. : . : . : . : . : . :
rJMFF040D03+ CTGCAGCGCAATCCAGCCCGGGGGACCATGTTTCGAGCCAAACACAGTCGCCTCTCACGC
rJMSF007A07+ CT-CAGCGCAATCCAGCCCGGGGGACCATGTTTCGAGCCAAACACAGTCGCCTCTCACGC
JMFN046D11- CTGCAGCGCAATCCAGCCCGGGGGACCATGTTTCGAGCCAAACACAGTCGCCTCTCACGC
rJMFF048O07+ CTGCAGCGCAATCCAGCCCGGGGGACCATGTTTCGAGCCAAACACAGTCGCCTCTCACGC
____________________________________________________________
consensus CTGCAGCGCAATCCAGCCCGGGGGACCATGTTTCGAGCCAAACACAGTCGCCTCTCACGC
. : . : . : . : . : . :
rJMFF040D03+ TGCATATGCCATGAACCTCCTCTACCAAACTGCAGGGAAGAACCCTTGGAACTGCGATTT
rJMSF007A07+ TGCATATGCCATGAACCTCCTCTACCAAACTGCAGGGAAGAACCCTTGGAACTGCGATTT
JMFN046D11- TGCATATGCCATGAACCTCCTCTACCAAACTGCAGGGAAGAACCCTTGGAACTGCGATTT
rJMFF048O07+ TGCATATGCCATGAACCTCCTCTACCAAACTGCAGGGAAGAACCCTTGGAACTGCGATTT
____________________________________________________________
consensus TGCATATGCCATGAACCTCCTCTACCAAACTGCAGGGAAGAACCCTTGGAACTGCGATTT
. : . : . : . : . : . :
rJMFF040D03+ CTCACAGACCGCCACACTCTCATCAACTAATCCCAGTTATGATGGTTGTACCTATCCCAG
rJMSF007A07+ CTCACAGACCGCCACACTCTCATCAACTAATCCCAGTTATGATGGTTGTACCTATCCCAG
JMFN046D11- CTCACAGACCGCCACACTCTCATCAACTAATCCCAGTTATGATGGTTGTACCTATCCCAG
rJMFF048O07+ CTCACAGACCGCCACACTCTCATCAACTAATCCCAGTTATGATGGTTGTACCTATCCCAG
____________________________________________________________
consensus CTCACAGACCGCCACACTCTCATCAACTAATCCCAGTTATGATGGTTGTACCTATCCCAG
. : . : . : . : . : . :
rJMFF040D03+ CGGCAGTACCTGATAAAGAAGATAGGCGTTATATTTACAAGTTTATTATACATCATCATC
rJMSF007A07+ CGGCAGTACCTGATAAAGAAGATAGGCGTTATATTTACAAGTTTATTATACATCATCATC
JMFN046D11- CGGCAGTACCTGATAAAGAAGATAGGCGTTATATTTACAAGTTTATTATACATCATCATC
rJMFF048O07+ CGGCAGTACCTGATAAAGAAGATAGGCGTTATATTTACAAGTTTATTATACATCATCATC
____________________________________________________________
consensus CGGCAGTACCTGATAAAGAAGATAGGCGTTATATTTACAAGTTTATTATACATCATCATC
. : . : . : . : . : . :
rJMFF040D03+ AAGTTTCAAGCTGTGCTGTTATCTGTGTTGTCTTTTATAGTATTCTTGTGCTTGTTGGAA
rJMSF007A07+ AAGTTTCAAGCTGTGCTGTTATCTGTGTTGTCTTTTATAGTATTCTTGTGCTTGTTGGAA
JMFN046D11- AAGTTTCAAGCTGTGCTGTTATCTGTGTTGTCTTTTATAGTATTCTTGTGCTTGTTGGAA
rJMFF048O07+ AAGTTTCAAGCTGTGCTGTNATCTGTGTTGTCTTTTATAGTATTCTTGTGCTTGTTGGAA
____________________________________________________________
consensus AAGTTTCAAGCTGTGCTGTTATCTGTGTTGTCTTTTATAGTATTCTTGTGCTTGTTGGAA
. : . : . : . : . : . :
rJMFF040D03+ AGGTAGAGTTCCCATTATTAGCACGAAATAATTTATATGCAGATTAGTTTCAACCTGTGG
rJMSF007A07+ AGGTAGAGTTCCCATTATTAGCACGAAATAATTTATATGCAGATTAGTTTCAACCTGTGG
JMFN046D11- AGGTAGAGTTCCCATTATTAGCACGAAATAATTTATATGCAGATTAGTTTCAACCTGTGG
rJMFF048O07+ AGGTAGAGTTCCCATTATTAGCACGAAATAATTTATATGCAGATTAGTTTCAACCTGTGG
____________________________________________________________
consensus AGGTAGAGTTCCCATTATTAGCACGAAATAATTTATATGCAGATTAGTTTCAACCTGTGG
. : . : . : . : . : . :
rJMFF040D03+ AAGAGGGATTTCTTTCCCTTAATCTGTATTGTTTTTCAAGTGTTCATACTTGTATT
rJMSF007A07+ AAGAGGGATTTCTTTCCCTTAATCTGTATTGTTTTTCAAGTGTTCATACTTGTATT
JMFN046D11- AAGAGGGATTTCTTTCCCTTAATCTGTATTGTTTTTCAAGTGTTCATACTTGTATTTGAA
rJMFF048O07+ AAGAGGGATTTCTTTCCCTTAATCTGTATTGTTTTTCAAGTGTTCATACTTGTATTTGAA
____________________________________________________________
consensus AAGAGGGATTTCTTTCCCTTAATCTGTATTGTTTTTCAAGTGTTCATACTTGTATTTGAA
. : . : . : . : . : . :
JMFN046D11- GTTTATGAGATACAATAAATAATTAATGTAAATAAATAAATAGTTCTATTTTTTT
rJMFF048O07+ GTTTATGAGATACAATAAATAATTAATGTAAATAAATAAATAGTTCTATTTTTTTAATCT
____________________________________________________________
consensus GTTTATGAGATACAATAAATAATTAATGTAAATAAATAAATAGTTCTATTTTTTTAATCT