Contig 004148:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048M09Sequence625006447 (4)ref|XP_009598882.1|2e-36PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N575004148 (4)gb|ACU19049.1|1e-57unknown [Glycine max]
JMSF010A05Sequence262006447 (4)796004148 (4)ref|XP_009598882.1|2e-144PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N
JMSF014A03Sequence293006447 (4)778004148 (4)ref|XP_009598882.1|3e-130PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N
JMSF049P23Sequence688006447 (4)ref|XP_009598882.1|3e-34PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N664004148 (4)gb|KDO53115.1|1e-91hypothetical protein CISIN_1g0170092mg, partial [Citrus sinensis] gb|KDO53116.1|

Alignment

This contig is upended


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rJMSF010A05+                      TATGTGAGATGGGGAGAGAAGCAGCNGTACAGAACCAAAGTAGTTGAG
                      ____________________________________________________________
consensus                         TATGTGAGATGGGGAGAGAAGCAGCNGTACAGAACCAAAGTAGTTGAG
 
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rJMSF010A05+          AAGTCTCCTGGAGAAGAGGCTGGGATTAAATCAGCTACAGTTGAAGNTGAAGGTCGATAT
rJMSF014A03+                               GGGATTAANTCAGCTACAGTTGAAGTTGAAGGTCGATAT
                      ____________________________________________________________
consensus             AAGTCTCCTGGAGAAGAGGCTGGGATTAAATCAGCTACAGTTGAAGTTGAAGGTCGATAT
 
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rJMSF010A05+          GCATATGGTTATTTATCTGGAGAGAAAGGAACCCATAGAATTGTGCGACAATCTCCTTTC
rJMSF014A03+          GCATATGGTTATTTATCTGGAGAGAAAGGAACCCATAGAATTGTGCGACAATCTCCTTTC
                      ____________________________________________________________
consensus             GCATATGGTTATTTATCTGGAGAGAAAGGAACCCATAGAATTGTGCGACAATCTCCTTTC
 
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rJMSF010A05+          AATGCTAAAGGCCTTCGCCAGACAAGCTTCTCTGGTGTCGAGGTCATGCCTCTTCTTCCC
rJMSF014A03+          AATGCTAAAGGCCTTCGCCAGACAAGCTTCTCTGGTGTCGAGGTCATGCCTCTTCTTCCC
                      ____________________________________________________________
consensus             AATGCTAAAGGCCTTCGCCAGACAAGCTTCTCTGGTGTCGAGGTCATGCCTCTTCTTCCC
 
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rJMSF010A05+          GAGGACTCAACAGATGTCGAAATACCAGATGAAGACTTGGATATCAGTTTTACCAGAGCA
rJMSF014A03+          GAGGACTCAACAGATGTCGAAATACCAGATGAAGACTTGGATATCAGTTTTACCAGAGCA
rJMSF049P23+             GACTCAACAGATGTCGAAATACCAGATGAAGACTTGGATATCAGTTTTACCAGAGCA
                      ____________________________________________________________
consensus             GAGGACTCAACAGATGTCGAAATACCAGATGAAGACTTGGATATCAGTTTTACCAGAGCA
 
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rJMSF010A05+          GGCGGGAAAGGAGGTCAAAATGTTAACAAGGTTGAAACAGCAGTGCGCATTACACATATC
rJMSF014A03+          GGCGGGAAAGGAGGTCAAAATGTTAACAAGGTTGAAACAGCAGTGCGCATTACACATATC
rJMSF049P23+          GGCGGGAAAGGAGGTCAAAATGTTAACAAGGTTGAAACAGCAGTGCGCATTACACATATC
                      ____________________________________________________________
consensus             GGCGGGAAAGGAGGTCAAAATGTTAACAAGGTTGAAACAGCAGTGCGCATTACACATATC
 
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rJMSF010A05+          CCCACTGGTGTAGCCGTCCGTTGTACAGAAGAGAGAACACAACTAGCGAACAAGATAAAG
rJMSF014A03+          CCCACTGGTGTAGCCGTCCGTTGTACAGAAGAGAGAACACAACTAGCGAACAAGATAAAG
rJMSF049P23+          CCCACTGGTGTAGCCGTCCGTTGTACAGAAGAGAGAACACAACTAGCGAACAAGATAAAG
rJMFF048M09+                                   CAGAAGAGAGAACACAACTAGCGAACAAGATAAAG
                      ____________________________________________________________
consensus             CCCACTGGTGTAGCCGTCCGTTGTACAGAAGAGAGAACACAACTAGCGAACAAGATAAAG
 
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rJMSF010A05+          GCTCTGAGCCGATTGAAAGCCAAACTGCTAGTCATAGCCGAGGAACAAAGAGCGTCTGAA
rJMSF014A03+          GCTCTGAGCCGATTGAAAGCCAAACTGCTAGTCATAGCCGAGGAACAAAGAGCGTCTGAA
rJMSF049P23+          GCTCTGAGCCGATTGAAAGCCAAACTGCTAGTCATAGCCGAGGAACAAAGAGCGTCTGAA
rJMFF048M09+          GCTCTGAGCCGATTGAAAGCCAAACTGCTAGTCATAGCCGAGGAACAAAGAGCGTCTGAA
                      ____________________________________________________________
consensus             GCTCTGAGCCGATTGAAAGCCAAACTGCTAGTCATAGCCGAGGAACAAAGAGCGTCTGAA
 
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rJMSF010A05+          ATAAAGCAAATAAGAGGGGATGCGGTGAAGGCAGAGTGGGGGCAACAAATACGGAACTAC
rJMSF014A03+          ATAAAGCAAATAAGAGGGGATGCGGTGAAGGCAGAGTGGGGGCAACAAATACGGAACTAC
rJMSF049P23+          ATAAAGCAAATAAGAGGGGATGCGGTGAAGGCAGAGTGGGGGCAACAAATACGGAACTAC
rJMFF048M09+          ATAAAGCAAATAAGAGGGGATGCGGTGAAGGCAGAGTGGGGGCAACAAATACGGAACTAC
                      ____________________________________________________________
consensus             ATAAAGCAAATAAGAGGGGATGCGGTGAAGGCAGAGTGGGGGCAACAAATACGGAACTAC
 
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rJMSF010A05+          GTGTTTCATCCTTACAAGCTGGTGAAAGATGTTTGGACCGGGTATGAAACTTCAGACATC
rJMSF014A03+          GTGTTTCATCCTTACAAGCTGGTGAAAGATGTTCGGACCGGGTATGAAACTTCAGACATC
rJMSF049P23+          GTGTTTCATCCTTACAAGCTGGTGAAAGATGTTCGGACCGGGTATGAAACTTCAGACATC
rJMFF048M09+          GTGTTTCATCCTTACAAGCTGGTGAAAGATGTTCGGACCGGGTATGAAACTTCAGACATC
                      ____________________________________________________________
consensus             GTGTTTCATCCTTACAAGCTGGTGAAAGATGTTCGGACCGGGTATGAAACTTCAGACATC
 
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rJMSF010A05+          ACTTCTGTAATGGATGGGGAGCTAGATCCCTTCATTAGATCCTTCCTCAAGTACAAGTAC
rJMSF014A03+          ACTTCTGTAATGGATGGGGAGCTAGATCCCTTCATTAGATCCTTCCTCAAGTACAAGTAC
rJMSF049P23+          ACTTCTGTAATGGATGGGGAGCTAGATCCCTTCATTAGATCCTTCCTCAAGTACAAGTAC
rJMFF048M09+          ACTTCTGTAATGGATGGGGAGCTAGATCCCTTCATTAGATCCTTCCTCAAGTACAAGTAC
                      ____________________________________________________________
consensus             ACTTCTGTAATGGATGGGGAGCTAGATCCCTTCATTAGATCCTTCCTCAAGTACAAGTAC
 
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rJMSF010A05+          AGCATGTCAATGTCCTCTGGTGGAGAATAGATTCTGTGCAAAGTTGAGTAGTCTCATCAG
rJMSF014A03+          AGCATGTCAATGTCCTCTGGTGGAGAATAGATTCTGTGCAAAGTTGAGTAGTCTCATCAG
rJMSF049P23+          AGCATGTCAATGTCCTCTGGTGGAGAATAGATTCTGTGCAAAGTTGAGTAGTCTCATCAG
rJMFF048M09+          AGCATGTCAATGTCCTCTGGTGGAGAATAGATTCTGTGCAAAGTTGAGTAGTCTCATCAG
                      ____________________________________________________________
consensus             AGCATGTCAATGTCCTCTGGTGGAGAATAGATTCTGTGCAAAGTTGAGTAGTCTCATCAG
 
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rJMSF010A05+          TCATTAGTACTCCCCAAAAATCCACCAAAATGGGGATGCCATGGAAGTTTTGGTGTATCA
rJMSF014A03+          TCATTAGTACTCCCCAAAAATCCACCAAAATGGGGATGCCATGGAAGTTTTGGTGTATCA
rJMSF049P23+          TCATTAGTACTCCCCAAAAATCCACCAAAATGGGGATGCCATGGAAGTTTTGGTGTATCA
rJMFF048M09+          TCATTAGTACTCCCCAAAAATCCACCAAAATGGGGATGCCATGGAAGTTTTGGTGTATCA
                      ____________________________________________________________
consensus             TCATTAGTACTCCCCAAAAATCCACCAAAATGGGGATGCCATGGAAGTTTTGGTGTATCA
 
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rJMSF010A05+          ATCAATTGC                                                   
rJMSF014A03+          ATCAATTGCAGTGTGATGAAATAACAATTTATATATAATAGGGAAATCTGCCATTTGTTG
rJMSF049P23+          ATCAATTGCAGTGTGATGAAATAACAATTTATATATAATAGGGAAATCTGCCATTTGTTG
rJMFF048M09+          ATCAATTGCAGTGTGATGAAATAACAATTTATATATAATAGGGAAATCTGCCATTTGTTG
                      ____________________________________________________________
consensus             ATCAATTGCAGTGTGATGAAATAACAATTTATATATAATAGGGAAATCTGCCATTTGTTG
 
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rJMSF014A03+          TGTGTTC                                                     
rJMSF049P23+          TGTGTTCATGGTGAGATTTCACCCACTCACGACCTGACCCCTTTGATCGATGTTCTCAAA
rJMFF048M09+          TGTGTTCATGGTGAGATTTCACCCACTCACGACCTGACCCCTTTGATCGATGTTCTCAAA
                      ____________________________________________________________
consensus             TGTGTTCATGGTGAGATTTCACCCACTCACGACCTGACCCCTTTGATCGATGTTCTCAAA
 
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rJMSF049P23+          AGAAAAA                                                     
rJMFF048M09+          AGAAAAACTTATGTCAATTGCATTTTACTTACTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             AGAAAAACTTATGTCAATTGCATTTTACTTACTAAAAAAAAAAAAAAAACTCTCCAGGGT