Contig 004147:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF005E23-                                                   ACCCATTCTCCACATATTAT
JMFF048J04-                                                   ACCCATTCTCCACATATTAT
JMFF006K06-                                                   ACCCATTCTCCACATATTAT
                      ____________________________________________________________
consensus                                                     ACCCATTCTCCACATATTAT
 
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JMFF005E23-           TATTTCTCATCTCCGCCACACTTAAATATAACCCTGGCCCGGCCCGGCCATCTTTCTAAT
JMFF048J04-           TATTTCTCATCTCCGCCACACTTAAATATAACCCTGGCCCGGCCCGGCCATCTTTCTAAT
JMFF006K06-           TATTTCTCATCTCCGCCACACTTAAATATAACCCTGGCCCGGCCCGGCCATCTTTCTAAT
                      ____________________________________________________________
consensus             TATTTCTCATCTCCGCCACACTTAAATATAACCCTGGCCCGGCCCGGCCATCTTTCTAAT
 
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JMFF005E23-           ATCATGGCCACCGCCGCCACCACTGCCACCGGCCTTTCCTCTATCCTCCTCATTCTTGTC
JMFF048J04-           ATCATGGCCACCGCCGCCACCACTGCCACCGGCCTTTCCTCTATCCTCCTCATTCTTGTC
JMFF006K06-           ATCATGGCCACCGCCGCCACCACTGCCACCGGCCTTTCCTCTATCCTCCTCATTCTTGTC
rJMFF006K06+                                                                   GTC
                      ____________________________________________________________
consensus             ATCATGGCCACCGCCGCCACCACTGCCACCGGCCTTTCCTCTATCCTCCTCATTCTTGTC
 
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JMFF005E23-           TTGGCATTCACTACCGTTCTTGCTAACCCTCCTCCCTCTGACGAAGCCATAGTTATGAAG
JMFF048J04-           TTGGCATTCACTACCGTTCTTGCTAACCCTCCTCCCTCTGACGAAGCCATAGTTATGAAG
JMFF006K06-           TTGGCATTCACTACCGTTCTTGCTAACCCTCCTCCCTCTGACGAAGCCATAGTTATGAAG
rJMFF006K06+          TTGGCATTCACTACCGTTCTTGCTAACCCTCCTCCCTCTGACGAAGCCATAGTTATGAAG
rJMFF005E23+                                                TGACGAAGCCATAGTTATGAAG
                      ____________________________________________________________
consensus             TTGGCATTCACTACCGTTCTTGCTAACCCTCCTCCCTCTGACGAAGCCATAGTTATGAAG
 
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JMFF005E23-           AAATGCACGGAAGCCCTCGGCCCGCGAGGCTCCAACTTTGTCACATTTTGTGCTCGCAAT
JMFF048J04-           AAATGCACGGAAGCCCTCGGCCCGCGAGGCTCCAACTTTGTCACATTTTGTGCTCGCAAT
JMFF006K06-           AAATGCACGGAAGCCCTCGGCCCGCGAGGCTCCAACTTTGTCACATTTTGTGCTCGCAAT
rJMFF006K06+          AAATGCACGGAAGCCCTCGGCCCGCGAGGCTCCAACTTTGTCACATTTTGTGCTCGCAAT
rJMFF005E23+          AAATGCACGGAAGCCCTCGGCCCGCGAGGCTCCAACTTTGTCACATTTTGTGCTCGCAAT
                      ____________________________________________________________
consensus             AAATGCACGGAAGCCCTCGGCCCGCGAGGCTCCAACTTTGTCACATTTTGTGCTCGCAAT
 
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JMFF005E23-           CTCCTCGGCCACAGAGCTGCCTTCCTCGCTACCTGCGACGCCAGGAAAACCGTGGCCCTC
JMFF048J04-           CTCCTCGGCCACAGAGCTGCCTTCCTCGCTACCTGCGACGCCAGGAAAACCGTGGCCCTC
JMFF006K06-           CTCCTCGGCCACAGAGCTGCCTTCCTCGCTACCTGCGACGCCAGGAAAACCGTGGCCCTC
rJMFF006K06+          CTCCTCGGCCACAGAGCTGCCTTCCTCGCTACCTGCGACGCCAGGAAAACCGTGGCCCTC
rJMFF005E23+          CTCCTCGGCCACAGAGCTGCCTTCCTCGCTACCTGCGACGCCAGGAAAACCGTGGCCCTC
                      ____________________________________________________________
consensus             CTCCTCGGCCACAGAGCTGCCTTCCTCGCTACCTGCGACGCCAGGAAAACCGTGGCCCTC
 
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JMFF005E23-           GTCATAAAGGAAGTCCACAACAAGGCTAAAGCCGTCGAGGCTCTGGAGACGAAGATAAAT
JMFF048J04-           GTCATAAAGGAAGTCCACAACAAGGCTAAAGCCGTCGAGGCTCTGGAGACGAAGATAAAT
JMFF006K06-           GTCATAAAGGAAGTCCACAACAAGGCTAAAGCCGTCGAGGCTCTGGAGACGAAGATAAAT
rJMFF006K06+          GTCATAAAGGAAGTCCACAACAAGGCTAAAGCCGTCGAGGCTCTGGAGACGAAGATAAAT
rJMFF005E23+          GTCATAAAGGAAGTCCACAACAAGGCTAAAGCCGTCGAGGCTCTGGAGACGAAGATAAAT
                      ____________________________________________________________
consensus             GTCATAAAGGAAGTCCACAACAAGGCTAAAGCCGTCGAGGCTCTGGAGACGAAGATAAAT
 
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JMFF005E23-           TCTTCTGATGATAAGTCCTCGAGCACGAAAGATGCCCGGGACTTGAAGAGTTGTTGGAGG
JMFF048J04-           TCTTCTGATGAT                                                
JMFF006K06-           TCTTCTGATGATAAGTCCTCGAGCACGAAAGATGCCCGGGACTTGAAGAGTTGTTGGAGG
rJMFF006K06+          TCTTCTGATGATAAGTCCTCGAGCACGAAAGATGCCCGGGACTTGAAGAGTTGTTGGAGG
rJMFF005E23+          TCTTCTGATGATAAGTCCTCGAGCACGAAAGATGCCCGGGACTTGAAGAGTTGTTGGAGG
                      ____________________________________________________________
consensus             TCTTCTGATGATAAGTCCTCGAGCACGAAAGATGCCCGGGACTTGAAGAGTTGTTGGAGG
 
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JMFF005E23-           ATTACAAACAAGGTGGTTAGCTCAATCGCGAATGTTTTCGACGACACTTTAGTGATGAAG
JMFF006K06-           ATTACAAACAAGGTGGTTAGCTCAATCGCGAATGTTTTCGACGACACTTTAGTGATGAAG
rJMFF006K06+          ATTACAAACAAGGTGGTTAGCTCAATCGCGAATGTTTTCGACGACACTTTAGTGATGAAG
rJMFF005E23+          ATTACAAACAAGGTGGTTAGCTCAATCGCGAATGTTTTCGACGACACTTTAGTGATGAAG
                      ____________________________________________________________
consensus             ATTACAAACAAGGTGGTTAGCTCAATCGCGAATGTTTTCGACGACACTTTAGTGATGAAG
 
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JMFF005E23-           GGGCTTTCCAATGAATCTATTACAATGCTGAAAGGGAT                      
JMFF006K06-           GGGCTTTCCAATGAATCTATTACAATGCTGAAAGGGAT                      
rJMFF006K06+          GGGCTTTCCAATGAATCTATTACAATGCTGAAAGGGATTCATGGAGATGTAGCCACGATA
rJMFF005E23+          GGGCTTTCCAATGAATCTATTACAATGCTGAAAGGGATTCATGGAGATGTAGCCACGATA
                      ____________________________________________________________
consensus             GGGCTTTCCAATGAATCTATTACAATGCTGAAAGGGATTCATGGAGATGTAGCCACGATA
 
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rJMFF006K06+          AGGCAGAGATGTGATTCCTCGGTTCCTGGAAGACAAAACGGTTTGTGGTTGGAATTACGG
rJMFF005E23+          AGGCAGAGATGTGATTCCTCGGTTCCTGGAAGACAAAACGGTTTGTGGTTGGAATTACGG
                      ____________________________________________________________
consensus             AGGCAGAGATGTGATTCCTCGGTTCCTGGAAGACAAAACGGTTTGTGGTTGGAATTACGG
 
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rJMFF006K06+          TTAAAGGCGTTGGAATCTTTGACGGCTGATATGGTGGCGTGGGCGTTTGTGGATCACCTC
rJMFF005E23+          TTAAAGGCGTTGGAATCTTTGACGGCTGATATGGTGGCGTGGGCGTTTGTGGATCACCTC
rJMFF048J04+                    TGGAATCTTTGACGGCTGATATGGTGGCGTGGGCGTTTGTGGATCACCTC
                      ____________________________________________________________
consensus             TTAAAGGCGTTGGAATCTTTGACGGCTGATATGGTGGCGTGGGCGTTTGTGGATCACCTC
 
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rJMFF006K06+          TATAGTACTGCCCACTAATTTAATA                                   
rJMFF005E23+          TATAGTACTGCCCACTAATTTAATA                                   
rJMFF048J04+          TATAGTACTGCCCACTAATTTAATATAATAGTGTGTGTGTTTTGTGAGAAAAGAGTAATT
                      ____________________________________________________________
consensus             TATAGTACTGCCCACTAATTTAATATAATAGTGTGTGTGTTTTGTGAGAAAAGAGTAATT
 
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rJMFF048J04+          ATATATACATAATGGGAAAGGAGGAGAGAATAATGGGGTAAATGATTCTCTTCTTGTATG
                      ____________________________________________________________
consensus             ATATATACATAATGGGAAAGGAGGAGAGAATAATGGGGTAAATGATTCTCTTCTTGTATG
 
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rJMFF048J04+          TTGGGTTGATTATCATCATGTTTAGTTACTCTTGATTTATTCTGGAGAATGGAGATAATA
                      ____________________________________________________________
consensus             TTGGGTTGATTATCATCATGTTTAGTTACTCTTGATTTATTCTGGAGAATGGAGATAATA